Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07761 ATGCAAAACTTCCCAATTCTTTGCCTAACTATTATTAGTCTTTCTCTGCTTCACTTCCTCACGAACAATTTCCATGTACAAGCCCTCACTTTAGCCTCTGATATTGCAGCCCTCAAAGCTTTCAAAGCCTCAATCAAACCCTCTTCCATCGCACCCTGGTCATGCCTAGCATCTTGGAACTTTACTACTGATCCTTGCGCAGTCCCTCGCCGCACCTACTTCACCTGCGGCCTCACCTGCACCCCTGACTCCACCAGCATCAACCAAATCACCCTCGACCCTGCAGGTTACTCTGGCTCACTCACCCCACTTATCTCTCAACTCACCCATCTCACCACACTAGACCTCGCTGATAACTCCTTCTTTGGCCCAATCCCCTCTTCACTTTCTTCCCTCTCCAACCTCCAAACCTTAACCCTCCGATCCAATTCCTTCTCAGGCTCAATCCCTCCCTCCATAACCACCCTCAAGTCCCTCGAATCTCTGGACCTTTCACACAATTCCCTATCTGGGTCTCTCCCAAACTCAATGAATTCTCTCACCAATCTCCGCAGAATCGATCTGAGCTTCAACAAACTAACCGGTTCAATCCCCAAACTACCACCCAACTTGCTAGAACTCGCGCTCAAGGCCAATTCTCTATCTGGGCCTCTCCAAAAATCAACCTTTGAGGGGCTAAACCAATTGGAAGTAGTGGAACTCAGCGAGAACGCACTCGCCGGAACGATTGAATCGTGGTTCTTCCAGTTGCCGTCGCTGCAGCAAGTGGATTTGGCCAACAACAGCTTCACGGGAATTCAGATCTCAAGACCCGCGCGTGGTGGTGGAGGAAGCAACCTGGTGGCAGTGAACATCGGATTTAACAGAATCCAAGGTTACGCGCCCGCGAATCTCGCCGCGTATCCGCTGCTGTCGTTTTTATCGATTCGTCACAACTCGCTACGTGGCACGATCCCATTGGAGTATGGCCAGATCAAGTCTATGAAGAGGTTGTTCTTGGACGGGAACTTCCTCATCGGGAAACCGCCGGCAGGGTTGATGGCCGCCGGCACGACGGTTTCCGGAAGCTTGGGGGACAATTGTCTGCAGAGTTGTCCAGTGTCTTCACAGCTGTGCACGCCGGCACAGAAACCTAACACTGTTTGCAAACAAGCCTACCGTGGAAGACCAACACCATAG 1179 0.5157 MQNFPILCLTIISLSLLHFLTNNFHVQALTLASDIAALKAFKASIKPSSIAPWSCLASWNFTTDPCAVPRRTYFTCGLTCTPDSTSINQITLDPAGYSGSLTPLISQLTHLTTLDLADNSFFGPIPSSLSSLSNLQTLTLRSNSFSGSIPPSITTLKSLESLDLSHNSLSGSLPNSMNSLTNLRRIDLSFNKLTGSIPKLPPNLLELALKANSLSGPLQKSTFEGLNQLEVVELSENALAGTIESWFFQLPSLQQVDLANNSFTGIQISRPARGGGGSNLVAVNIGFNRIQGYAPANLAAYPLLSFLSIRHNSLRGTIPLEYGQIKSMKRLFLDGNFLIGKPPAGLMAAGTTVSGSLGDNCLQSCPVSSQLCTPAQKPNTVCKQAYRGRPTP. 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07761 392 Gene3D Ribonuclease Inhibitor 202 376 IPR032675 -
Seca8g07761 392 Gene3D Ribonuclease Inhibitor 31 201 IPR032675 -
Seca8g07761 392 PRINTS Leucine-rich repeat signature 180 193 - -
Seca8g07761 392 PRINTS Leucine-rich repeat signature 159 172 - -
Seca8g07761 392 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 15 216 - -
Seca8g07761 392 Pfam Leucine rich repeat 202 262 IPR001611 GO:0005515
Seca8g07761 392 Pfam Leucine rich repeat 133 193 IPR001611 GO:0005515
Seca8g07761 392 Pfam Leucine rich repeat N-terminal domain 32 66 IPR013210 -
Seca8g07761 392 Pfam Leucine Rich Repeat 110 132 IPR001611 GO:0005515
Seca8g07761 392 ProSiteProfiles Leucine-rich repeat profile. 182 204 IPR001611 GO:0005515
Seca8g07761 392 ProSiteProfiles Leucine-rich repeat profile. 158 180 IPR001611 GO:0005515
Seca8g07761 392 SMART LRR_typ_2 156 179 IPR003591 -
Seca8g07761 392 SMART LRR_typ_2 108 132 IPR003591 -
Seca8g07761 392 SMART LRR_typ_2 180 207 IPR003591 -
Seca8g07761 392 SMART LRR_typ_2 250 271 IPR003591 -
Seca8g07761 392 SUPERFAMILY L domain-like 77 343 - -
Seca8g07761 392 FunFam Nuclear pore complex protein NUP107 31 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07761 Seca-Chr8 174866567 174867745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07761 37 386 Receptor kinase-like Gene Family AT3G05360 31.903 3.30e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07761 - - lja:Lj5g3v2113590.1 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07761 8 174866567 174867745 Seca8g07761 8 174866567 174867745 ECH