Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07720 ATGTTGGGTTTTATAATCAGGGACATCTCTCAAAGAGGTTTGACATGCCAAGTGATGACATTGAGGTCTTCACGTTTCCGAAAGCTGAACTTGATGGGGGAGTTCATGCATATGCACACACTTAATCTTGATTTCAGTTCTTCCCTGACGAGTTTCCAAGAGGACTGTTTTAATTGCATGCCCAATCTAGCGTGTCTCTCAATGTGTGAGACACGGATTACAAATCTTTGGACAACTGTTGCAGCTCTCTCTAAGCTTCCTTCTTTGGTTGAACTAAGGTTTCAATATTGGCAGTATTGCAATGATGCTGGGACATCTTTTAACTCATCCAATGTGAAGTCAGATAGCACTGCTGATTTTGGTGTGCTTGATAAAGTTCCTTTTATTGGCGAATCCTACACTGATACAAGGGAACTGACAGATCCCAACTTTAGTGTCGAAGATCCGCTAAGAAATTTTTATTTCTTTGATGAAGAAGTTGTAAATCATGATGTTCAAAACATGGTCGAGGATTCATCAGATGATAGTGAAATTGATTTTAATAGTCATCATCATAGATACTGGTTGTCAGATGTTTTTCCTGGGTGGAATTTACCAGTGCCTCTTCAGAGTGAGAATGAAGATGGAGAAGAGTCATCGCGAGCTTCCCATACAGGGAATATTTCTGATGTTTCTATGAAGTATATGTCCCGTCATGCATCACCAATATGTCATGAGAAACATTACAGAGAATTCATGATAGCTTCATTACCAAATCTTAAGATTTTAGATAATTTGCCCATCAGAAAGATTGACAAGGAAAGGGCTACTGGAATATTTTCTCAATACTTTGAATATCTTCCATACAGATGGAAGCACAAAGAGAGTGTTGTAAATATCTTACAGAAGCGAGAAATAAAATCAGGCCACATTAAGTTGAAATCTTCTAAGCGTAGCCCATCATATGCTTCTGGAACTTCCCAATATTTTTATACCAGGTCTCTTTCCGCTGCTAAATTGGGATCTTCAACTTGGCCTTTCTTGCATCCCCTTTCTCTATTAGGATGTGAATTGGATAAGGGATTTCGTCCAAGGCAGTTTGAGTACCACCCAACTGACTCCAGCTTGATGGTCTTTGGAACTTTAGATGGTGAAGTAGTTGTCATCAATCATGAGGATGAACATATTGTGAGTTATATCCCATCACTTGGAGCAATGAATAGTGTCTTGGGTCTCTGTTGGCTCAAGAAATATCCTTCTAAGCTTATAGCAGGTTCAGACAATGGTTCCCTGAAATTGTATGACATCCACCATATACCAAGAAAAATTACTGGCATATATGGGAATTCTGGTTGTGTTACCTTTGATGAATTTGACCAGTTGACATCTGTTCATGTTAACTCTATGGATGAACTATTTCTTGCAAGTGGTTACTCAAGAAATGTTGCTTTGTATGACATCAACAGTGGAAAACGCTTACAGGTGTTCACAGATATGCATCGTGGGCATATTAATGTAGTCAAGTTTGCAAATCATTCCCCGTCGATTTTTGCCACTTCATCATTTGATCAGGATGTCAAGATGTGGGACTTGAGACAGAAACCAATACACCCTTGCTTCACTGCTTCGAGCTCTAGAGGGAATGTGATGGTGTGCTTTTCTCCTGATGACCAATATATTCTTGCATCAGCTGTTGATAATGAGGTTAGACAATTTCTGGCTGTTGATGGTAGGCTTCACTTAGTTTTTGACATAGCTCCCACTGAAAGTTCTCAAAATTACACCCGTTCTTATTACATGAACGAGAGGGACTATATTATAAGTGGGAGTTGTGATGAACATGTTGTTCGTATTTGCTGTGCTCAAACAGGGAGGCGCCTGAGAGATATTTCCCTGGAGGGAAGAAGCTTAGGAAGTTCCATGTTCGTTCAATCTTTGAGGGGTGATCCTTTCAGGGATTTCAATATGAGCGTGTTAGCAGCCTACATGCGGCCAGGCTCCAAGTCTGAAATTGTCAAGGTCAATTTACTAGCATCTAGTGGCCATGCTAAGGATGACTCTGATGATCGGGGCCCTTGCCCTTCCCACAGTAAGGGAGCTTGA 2082 0.4044 MLGFIIRDISQRGLTCQVMTLRSSRFRKLNLMGEFMHMHTLNLDFSSSLTSFQEDCFNCMPNLACLSMCETRITNLWTTVAALSKLPSLVELRFQYWQYCNDAGTSFNSSNVKSDSTADFGVLDKVPFIGESYTDTRELTDPNFSVEDPLRNFYFFDEEVVNHDVQNMVEDSSDDSEIDFNSHHHRYWLSDVFPGWNLPVPLQSENEDGEESSRASHTGNISDVSMKYMSRHASPICHEKHYREFMIASLPNLKILDNLPIRKIDKERATGIFSQYFEYLPYRWKHKESVVNILQKREIKSGHIKLKSSKRSPSYASGTSQYFYTRSLSAAKLGSSTWPFLHPLSLLGCELDKGFRPRQFEYHPTDSSLMVFGTLDGEVVVINHEDEHIVSYIPSLGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIHHIPRKITGIYGNSGCVTFDEFDQLTSVHVNSMDELFLASGYSRNVALYDINSGKRLQVFTDMHRGHINVVKFANHSPSIFATSSFDQDVKMWDLRQKPIHPCFTASSSRGNVMVCFSPDDQYILASAVDNEVRQFLAVDGRLHLVFDIAPTESSQNYTRSYYMNERDYIISGSCDEHVVRICCAQTGRRLRDISLEGRSLGSSMFVQSLRGDPFRDFNMSVLAAYMRPGSKSEIVKVNLLASSGHAKDDSDDRGPCPSHSKGA. 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07720 693 SMART LRRcap_2 239 257 IPR003603 -
Seca8g07720 693 ProSiteProfiles Trp-Asp (WD) repeats profile. 490 525 IPR001680 GO:0005515
Seca8g07720 693 Gene3D Ribonuclease Inhibitor 6 124 IPR032675 -
Seca8g07720 693 Pfam WD domain, G-beta repeat 494 523 IPR001680 GO:0005515
Seca8g07720 693 SUPERFAMILY WD40 repeat-like 356 623 IPR036322 GO:0005515
Seca8g07720 693 Gene3D - 354 641 IPR015943 GO:0005515
Seca8g07720 693 MobiDBLite consensus disorder prediction 674 693 - -
Seca8g07720 693 PANTHER BNAC09G30780D PROTEIN 6 692 IPR046377 GO:0071493|GO:0080008
Seca8g07720 693 SMART WD40_4 386 428 IPR001680 GO:0005515
Seca8g07720 693 SMART WD40_4 441 479 IPR001680 GO:0005515
Seca8g07720 693 SMART WD40_4 482 523 IPR001680 GO:0005515
Seca8g07720 693 SMART WD40_4 528 566 IPR001680 GO:0005515
Seca8g07720 693 MobiDBLite consensus disorder prediction 675 693 - -
Seca8g07720 693 SUPERFAMILY L domain-like 18 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07720 Seca-Chr8 174474766 174483034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07720 409 608 Miscellaneous Gene Families AT5G08390 24.876 2.20e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07720 - - gmx:100806443 1236.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07720 8 174474766 174483034 Seca8g07720 8 174474766 174483034 ECH