Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07666 ATGTTGCAAACCCTAGGGCCCGTAAGCTTCAGCTTCGTTAATCGTTCATGGCTCCGACGCCTTAGCGTCCGTGCATTCTCTTCCTCCTCCGATTATGGAGACCAGTCACGTGGTGGCCTTCCTCGCTTCTACTCCGAAATTCTTCCTCCTTCCAAGGGTAATGTCATTCGTATACAAGGTGATGAAGTCTGGCATATGACAAAAGTATTGAGGTTGAGCACCAATGATAGGGTACAGCTCTTCAATGGGAAAGGAGGTCTGGTAGAAGGATGCATACAGAACATTGACCGCACTGGACTTGATTTTGTTGCATTGACTGATCTTAAGTTAATACCTCCACAGAATACACAATGGCATGTATATTCTGGTTTTGGTACTCTGAAGGGTGGCCGTGCTGACTGGCTTGTTGAGAAGTGTACAGAACTTGGGGCCAATAGTGTAACTCCTCTATTGACTGAACGTTCTCCATCAATCTCAGAAGGTCGGGTGGACAGGTTGGAACGTGTAATTTTAGCGGCATCCAAACAATGTCAACGACTGCATGAAATGATCCTGAAACCTCCTTTAGAGATTGATGACCTTTTGCATCTTGTAAGTTCTCCATTTCTAACATCCCAAATTTCAGTTATTTGA 633 0.4487 MLQTLGPVSFSFVNRSWLRRLSVRAFSSSSDYGDQSRGGLPRFYSEILPPSKGNVIRIQGDEVWHMTKVLRLSTNDRVQLFNGKGGLVEGCIQNIDRTGLDFVALTDLKLIPPQNTQWHVYSGFGTLKGGRADWLVEKCTELGANSVTPLLTERSPSISEGRVDRLERVILAASKQCQRLHEMILKPPLEIDDLLHLVSSPFLTSQISVI. 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07666 210 NCBIfam RsmE family RNA methyltransferase 53 195 IPR006700 GO:0006364|GO:0008168
Seca8g07666 210 SUPERFAMILY alpha/beta knot 116 196 IPR029028 -
Seca8g07666 210 SUPERFAMILY PUA domain-like 41 100 IPR015947 -
Seca8g07666 210 Pfam RNA methyltransferase domain 119 197 IPR046886 -
Seca8g07666 210 Gene3D - 39 206 IPR029026 -
Seca8g07666 210 Pfam RNA methyltransferase PUA domain 58 103 IPR046887 -
Seca8g07666 210 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 39 200 IPR006700 GO:0006364|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07666 Seca-Chr8 173953961 173957362 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07666 K09761 - gmx:100777253 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07666 8 173953961 173957362 Seca8g07666 8 173953961 173957362 ECH