Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07660 ATGAAGCTGAGACTCAGGTCTTTGGAATCCAAAGAAACCCTAAAGATCGAAGTCCCCGATTCTTGTTCGTTGCAGCAACTCAAAGAAACCATTTCTCGTGCCATTGCCTCCTCTTCTTCGTCCTCTTCTTCCTCCCTGCATCTCTCCCTCAACAGGAAGGACGAAATCCACGCCTCCTCGCCGCACGATCCCATCCACTCAATCGGCATTGCCGCCGGCGACCTCGTCTTCTACACCCGCAACCCTAATGCCCTTTCTCGTGAAGAAGAAACCAATCCCCGCGACGGACCCACCATTCAAGACTCGCCGGAGAAGGACGTGAGTGACGTTCCTTCCGCAGAAAAGTCTCCGACTGTGGATGCTTCAGAAGCGGAATCCATGAAAATGGTTGATGGGTCTGATGAGGCGGTGGCGGGGAAGGGCAATTCCGTGCCTTTGTCTGTGAAAAGGGTGCTCGGAGAATCGAATAGCAATGATGTTAGCGATTTCAAGATTTTAGTCTTTGCGGTTCATGCTATTATTCTTGAATCTGGGTTTGTTCGTGTGGATCAGGTTTCGGGTATGGAGTTTAGTTGCTTTCATCTTCTTGATGACTTGCCTTGGGCGGGGTCTTCTTTGATATCTTTGAGGTATACCCTTCCTGAGATTCTGACAAATGGTTCCTCTCATACTGTGAATTTGAAAATTCAGACCTTGGGGGATATTGTGAATGTTTGTGGGTCATTGTCTGATGATGCTAGCGCGAGCTTGCATACGATTTATTTGGATATATGCAAATTTGTACGGCCTTTAAGGTTGATGCTGTCAAATTCTGAAGTTTTTGAATTGTGGAAGATGGTGAAAGATGAGCTTGCATTGCCACTCTTAATTGATCTTTGTGAGAAGGCTGGACTGAATCCTCCACCTTGTTTCATGCGCCTACCCACAGAACTTAAGATGAAGATATTGGAGTATCTTCGTGGCGTTGATTTGGCCAGATTAGAATGTACGTGTTCAGAAATGCGATACTTGGCCTCCAACAATGATTTGTGGAAGATGAAGCTTTGGGAGGAGTTTGGATTAGGGGAGACTAGAGGAAAGTATCTTAAGGAGTTTTTTGCCCTACGTTTTGTAACAAAAAAGAAATCTGAACAACGGTTTCCTTTTCAAGGGCATCGGATTGGTTTTCCAAGAAACTTCCCTATGAGAAGAGAACCCAATCCTTTTGGAGTGCCTCCAATTTGGGGGGGAGAATATGATCTGCACCCAAGCTTTGGTCTAACACTCCCTGTATACCCACCAAGGCGGGGTTTCGTTCCCCGTTGTCATCTGAGCGAATTCAATAACTAG 1329 0.462 MKLRLRSLESKETLKIEVPDSCSLQQLKETISRAIASSSSSSSSSLHLSLNRKDEIHASSPHDPIHSIGIAAGDLVFYTRNPNALSREEETNPRDGPTIQDSPEKDVSDVPSAEKSPTVDASEAESMKMVDGSDEAVAGKGNSVPLSVKRVLGESNSNDVSDFKILVFAVHAIILESGFVRVDQVSGMEFSCFHLLDDLPWAGSSLISLRYTLPEILTNGSSHTVNLKIQTLGDIVNVCGSLSDDASASLHTIYLDICKFVRPLRLMLSNSEVFELWKMVKDELALPLLIDLCEKAGLNPPPCFMRLPTELKMKILEYLRGVDLARLECTCSEMRYLASNNDLWKMKLWEEFGLGETRGKYLKEFFALRFVTKKKSEQRFPFQGHRIGFPRNFPMRREPNPFGVPPIWGGEYDLHPSFGLTLPVYPPRRGFVPRCHLSEFNN. 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07660 442 Gene3D - 141 304 - -
Seca8g07660 442 CDD F-box_AtSKIP22-like 303 347 - -
Seca8g07660 442 Gene3D - 1 79 - -
Seca8g07660 442 Gene3D - 305 380 - -
Seca8g07660 442 ProSiteProfiles F-box domain profile. 301 347 IPR001810 GO:0005515
Seca8g07660 442 SMART fbox_2 307 347 IPR001810 GO:0005515
Seca8g07660 442 MobiDBLite consensus disorder prediction 87 111 - -
Seca8g07660 442 MobiDBLite consensus disorder prediction 84 126 - -
Seca8g07660 442 Pfam F-box-like 306 345 IPR001810 GO:0005515
Seca8g07660 442 PANTHER F-BOX PROTEIN SKIP22 1 440 - -
Seca8g07660 442 SUPERFAMILY F-box domain 297 358 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07660 Seca-Chr8 173916493 173917821 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07660 K10293 - gmx:100796338 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07660 8 173916493 173917821 Seca8g07660 8 173916493 173917821 ECH