Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07659 ATGCCAGGTGACAAGACCGTTGGCGGTGGTGATGATGCTTTCAACACTTTCTTCAGCGAGACTGGTGCTGGAAAGCATGTCCCACGCGCTGTTTTTGTAGATCTTGAACCCACCGTTATTGATGAGGTGAGGACTGGAGCTTACCGCCAGCTTTTCCACCCGGAGCAGCTGATCAGTGGCAAAGAAGATGCTGCCAACAACTTTGCCCGTGGTCATTATACCATTGGGAAAGAGATTGTTGATCTGTGCTTGGACCGCATCAGAAAGCTTGCTGACAACTGCACTGGTCTCCAAGGGTTCTTGGTGTTCAATGCCGTTGGTGGAGGAACTGGTTCTGGGCTTGGTTCCCTTCTTTTGGAGCGCCTGTCTGTTGATTATGGCAAGAAATCAAAGCTTGGGTTCACTGTCTACCCCTCTCCTCAGGTGTCCACATCTGTTGTTGAGCCATACAACAGTGTCCTCTCTACCCACTCCCTCTTGGAGCACACTGATGTCGCTGTTCTGTTGGACAATGAAGCTATATATGATATCTGTAGGCGCTCCCTTGACATTGAGCGTCCCACATACACCAACCTCAATCGCCTTGTTTCTCAGGTGATTTCTTCTTTGACTGCTTCCCTGAGGTTTGATGGTGCCCTCAATGTGGATGTGACTGAATTCCAGACCAACTTGGTCCCCTATCCTAGAATCCATTTTATGCTCTCCTCATATGCTCCAGTTATCTCAGCTGAGAAGGCTTATCATGAGCAGCTTTCTGTAGCTGAAATTACCAACAGTGCATTCGAGCCTTCCTCTATGATGGCCAAGTGTGACCCTCGCCATGGAAAGTACATGGCATGTTGTCTGATGTACCGTGGTGATGTTGTACCCAAAGATGTCAATGCTGCTGTTGGCACCATCAAAACCAAGCGAACCATTCAGTTTGTAGATTGGTGCCCTACTGGTTTCAAGTGTGGTATTAACTATCAACCACCCACTGTTGTTCCTGGAGGTGACCTTGCCAAGGTGCAGAGGGCAGTTTGCATGATTTCAAACTCCACCAGTGTGGCTGAGGTGTTTAGTCGTATTGACCACAAGTTTGATCTCATGTATGCCAAGCGTGCTTTTGTCCACTGGTATGTGGGCGAGGGTATGGAAGAAGGTGAATTTTCTGAAGCTCGTGAGGATCTTGCTGCTCTTGAGAAGGATTATGAAGAAGTGGGTGCTGAGTCTGGTGAGGGTGGGGATGAAGACATGGATGACTACTAG 1248 0.4856 MPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESGEGGDEDMDDY. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07659 415 SUPERFAMILY Tubulin nucleotide-binding domain-like 7 209 IPR036525 -
Seca8g07659 415 FunFam Tubulin alpha chain 234 348 - -
Seca8g07659 415 PRINTS Tubulin signature 99 117 IPR000217 GO:0005874|GO:0007017
Seca8g07659 415 PRINTS Tubulin signature 18 37 IPR000217 GO:0005874|GO:0007017
Seca8g07659 415 PRINTS Tubulin signature 143 156 IPR000217 GO:0005874|GO:0007017
Seca8g07659 415 PRINTS Tubulin signature 118 139 IPR000217 GO:0005874|GO:0007017
Seca8g07659 415 PRINTS Tubulin signature 73 97 IPR000217 GO:0005874|GO:0007017
Seca8g07659 415 PRINTS Tubulin signature 60 71 IPR000217 GO:0005874|GO:0007017
Seca8g07659 415 PRINTS Tubulin signature 345 373 IPR000217 GO:0005874|GO:0007017
Seca8g07659 415 PRINTS Tubulin signature 157 177 IPR000217 GO:0005874|GO:0007017
Seca8g07659 415 Coils Coil 383 403 - -
Seca8g07659 415 Gene3D Helix hairpin bin 349 401 IPR023123 -
Seca8g07659 415 FunFam Tubulin alpha chain 349 415 - -
Seca8g07659 415 SUPERFAMILY Tubulin C-terminal domain-like 211 401 IPR008280 -
Seca8g07659 415 Gene3D - 234 348 IPR037103 -
Seca8g07659 415 FunFam Tubulin alpha chain 1 233 - -
Seca8g07659 415 PANTHER TUBULIN 10 404 IPR000217 GO:0005874|GO:0007017
Seca8g07659 415 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 107 113 IPR017975 GO:0005525|GO:0005874|GO:0007017
Seca8g07659 415 Gene3D Tubulin/FtsZ, GTPase domain 1 233 IPR036525 -
Seca8g07659 415 Pfam Tubulin C-terminal domain 228 357 IPR018316 -
Seca8g07659 415 CDD alpha_tubulin 1 400 - -
Seca8g07659 415 SMART Tubulin_4 14 211 IPR003008 GO:0005525
Seca8g07659 415 MobiDBLite consensus disorder prediction 395 415 - -
Seca8g07659 415 Pfam Tubulin/FtsZ family, GTPase domain 12 178 IPR003008 GO:0005525
Seca8g07659 415 PRINTS Alpha-tubulin signature 325 344 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Seca8g07659 415 PRINTS Alpha-tubulin signature 53 66 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Seca8g07659 415 PRINTS Alpha-tubulin signature 350 366 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Seca8g07659 415 PRINTS Alpha-tubulin signature 286 307 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Seca8g07659 415 PRINTS Alpha-tubulin signature 126 137 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Seca8g07659 415 PRINTS Alpha-tubulin signature 179 191 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Seca8g07659 415 PRINTS Alpha-tubulin signature 387 403 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Seca8g07659 415 PRINTS Alpha-tubulin signature 113 125 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Seca8g07659 415 PRINTS Alpha-tubulin signature 85 93 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Seca8g07659 415 PRINTS Alpha-tubulin signature 239 254 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Seca8g07659 415 PRINTS Alpha-tubulin signature 10 23 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Seca8g07659 415 PRINTS Alpha-tubulin signature 312 325 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Seca8g07659 415 SMART Tubulin_C_4 213 358 IPR018316 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07659 Seca-Chr8 173906364 173908622 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07659 K07374 - jre:108983125 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07659 8 173906364 173908622 Seca8g07659 8 173906364 173908622 ECH