Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07447 ATGGGTTGGTTGTTCCCCCAATTTATATGGGCATTTCTGGCTGGGAGCCTCTTCTTTATTGGCTTATCTTATTCTCATAAAGTTCCTTTGTATGTAGATCCAAAGTACCCATTTGTCAAAGAAGCAACTTCTGCTCCACCAATCTTATCTTATGACTACATAGTCATTGGTGGAGGAACATGTGGGTGTCCACTAGCAGCAACTCTTTCACAAGGTGCCAGAGTCTTAGTCCTTGAAAGAGGAGGCTCTCCTTATACAAACCCAGAGAAAATTAACATAAATAACTATGTTAATTCCCTCTCTGACACAAGTCCTTCATCATTTGCTCAGCAATTCATATCCAGGGATGGTGTCCTCAATGCCCGGGCACGTGCCTTGGGTGGTGGCTCTGTCTTGAATGCTGGTTTCTACACAAGGGCTAGCTTAAGGTACATAAAGCAATCTGGTTGGAATGAAACTTTGGCTCAGAATGCATATAAATGGGTGGAAAAGAAGGTGGTGTTTGAGCCTCCAATGTTGCAATGGCAATCAGCAGTGAAGGATGGGCTGCTGGAAGCAGGGGTGTTGCCTTACAATGGTTTCACTTTTGATCACTTGTATGGGACTAAAGTTGGAGGGTCAATTTTTGATAAAGAGGGTCATAGGCACACTGCAGCTGATTTGTTAGAGTATGCTGATCCTAGGAGGATTTCTATTTATCTGCATGCCACAGTGCAGAAGATACTATTTAAGTATAATGGAGAAAAAAGAAGGCCACAAGCTTATGGAGTAATTTTCAAAGATGCATTTGGGGTCATACACAGAGCATTCTTAAGCACAAAATCCAAGAATGAGATAATCTTATCAGCCGGTGCAATTGGAAGTCCACAGGTGCTGATGCTGAGTGGCATTGGTCCTGCTAACCATCTTCAAGCTCATGGAATCAAAGTGGTTTTGGATCAGCCTTTGGTGGGTCAAGGGATGGCAGATAATCCAATGAATGTTCTAGTGGTTCCTTCCCCTGTACCTGTTGAAGTCTCTCTCATCCAAACAGTTGGCATTACTAAGTTTGGTAGCTTCATTGAAACAGCCAGTGGATTGAGTTTAGGTCATTCTTGGCCTGAAAAGCTTAAAGGGATTTTTGAATTTGTATCAAACCAGAGTGGCCAACCCTCCATGTTTCCCCCAGAAGCCAAGGAGAGTGTAGCAGACACTATTAGATCTTTAGCCAATCCAACTCTTAAAGGAGGAGTCATACTTGAAAAGATTATGGGACCACGGTCCACGGGTCATCTGGAGCTCCTAACTACTAATCCTAATGATAACCCATCAGTTACCTTTAACTATTTCAAGGACCCAGAAGACTTGAGGATGTGTGTGGAAGGCATGAAAACAATCATAGATGTGATAAACTCAAAAGCATTCTCAAAGTTCCGTTATCACAACATGCCTGTCCAAGCTCTAATAGACTTGATGTTGCACTTACCAGTGAACTTGAGGCCAAAACATCCTAGTGCTGCATTTTCTTTGGAACAGTATTGCATTGACACTGTCCTAACAATTTGGCATTACCATGGTGGCTGCCAAACTGGTAAGGTTGTTGATCATAATTATAAGGTTATTGGTGTGGAAGCTCTGAGAGTAATTGATGGATCCACTTTTTATCGCTCACCGGGGACTAATCCTCAAGCTACTGTAATGATGCTTGGAAGGTATATGGGAGAAAAGATTATAAAGAAAAGATTTTTCCAGGGGCGGAAGTGA 1743 0.424 MGWLFPQFIWAFLAGSLFFIGLSYSHKVPLYVDPKYPFVKEATSAPPILSYDYIVIGGGTCGCPLAATLSQGARVLVLERGGSPYTNPEKININNYVNSLSDTSPSSFAQQFISRDGVLNARARALGGGSVLNAGFYTRASLRYIKQSGWNETLAQNAYKWVEKKVVFEPPMLQWQSAVKDGLLEAGVLPYNGFTFDHLYGTKVGGSIFDKEGHRHTAADLLEYADPRRISIYLHATVQKILFKYNGEKRRPQAYGVIFKDAFGVIHRAFLSTKSKNEIILSAGAIGSPQVLMLSGIGPANHLQAHGIKVVLDQPLVGQGMADNPMNVLVVPSPVPVEVSLIQTVGITKFGSFIETASGLSLGHSWPEKLKGIFEFVSNQSGQPSMFPPEAKESVADTIRSLANPTLKGGVILEKIMGPRSTGHLELLTTNPNDNPSVTFNYFKDPEDLRMCVEGMKTIIDVINSKAFSKFRYHNMPVQALIDLMLHLPVNLRPKHPSAAFSLEQYCIDTVLTIWHYHGGCQTGKVVDHNYKVIGVEALRVIDGSTFYRSPGTNPQATVMMLGRYMGEKIIKKRFFQGRK. 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07447 580 Gene3D - 51 563 IPR036188 -
Seca8g07447 580 Pfam GMC oxidoreductase 419 564 IPR007867 GO:0016614
Seca8g07447 580 SUPERFAMILY FAD/NAD(P)-binding domain 49 574 IPR036188 -
Seca8g07447 580 Gene3D - 168 513 - -
Seca8g07447 580 PANTHER OSJNBA0019K04.7 PROTEIN 24 574 - -
Seca8g07447 580 SUPERFAMILY FAD-linked reductases, C-terminal domain 321 520 - -
Seca8g07447 580 PIRSF Alcohol_oxidase 36 578 IPR012132 GO:0050660
Seca8g07447 580 Pfam GMC oxidoreductase 51 325 IPR000172 GO:0016614|GO:0050660
Seca8g07447 580 ProSitePatterns GMC oxidoreductases signature 2. 284 298 IPR000172 GO:0016614|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07447 Seca-Chr8 171489584 171492329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07447 36 574 Miscellaneous Gene Families AT5G51950 62.936 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07447 - - gmx:100780453 1006.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07447 8 171489584 171492329 Seca8g07447 8 171489584 171492329 ECH