Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07405 ATGCTGTTATCGACTGATGTAAAAGTTCCTTCAAACTGGGTTAAGATAAATAGCACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTAGTGACAGCATTAGACAGGTTATCATTAGCGAAAGAGGAGCTTACTGTTGCCTGCCGAGCTGCATGGGATAGCTTTCTGAGGGACTTCAGTAAACACTATGCTGAGTTCCAAGCTGCTGTTCAAGCACTAGCTGCTTTAGATTGTCTGCATTCACTTGCCATTCTTTCAAGAAATAAGGGTTACGTTCACCCAGTGTTTGTAAATGACTGTGAGCCTGTTCAGATACAAATTTGTTCTGGTAGACATCCGGTTTTGGAGACTACCTTACAAGACAATTTTGTCCCAAATGATACAAACATGCATGCAGACAGAGAGTACTGTCAGATTGTTACTGGACCCAATATGGGAGGGAAAAGTTGCTACGTTCGCCAGGTGGCTCTGATTGCCATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTGCATGTCCTGGATGGGATCTACACCCGGATGGGTGCTTCTGACAGTATTCAGCAAGGGAGAAGCACCTTCCTAGAAGAACTATGTGAGACGTCGCAGATACTCCATAGATGTACAGGACACTCACTAGTTATCATTGATGAGCTTGGGAGAGGTACAAGTACACATGATGGCATGGCCATTGCTTATGCGACATTGCATTATCTTCTGAAACAGAAAAAAAGCCTGGTCCTCTTTGTCACTCACTATCCAAAGATTGCCAATCTGAGAACTGAATTTCCATGCTCTGTGGCAGCATACCATGTATCACATCTGACTTCACATGATGATGCAAGTAAAACCTCCAACTTGGATCATGAAGATGTCACTTATCTATACAAGCTTGTACCTGGTGTGTCAGAGAGGAGTTTTGGGTTTAAGGTTGCGCAGCTTGCTCAGTTACCATCACATTGCATTAGTCGAGCCATTGTCATGGCTTCCAAATTAGAAGCACTAGTAAATAATCGAATACATAGTAGATCGGGAAAGGAGCTGCTGTTGGATGCGCCGGTGCTTGATCAAGAACAAGAACCACACCAGCTTATGGCTCAACCACGTGATTGTCCATGTCAAGATTTTGGTAGAGCTTACAAGGAATTCTATTCAAACTTAAAAGCTGCAATACTAGATGATGACCATGCAAAAAGCTTTCAGCTTTTGGAGAATGCTAGAAGCATTGCAAAGAAATTAATTGGCTGGTCAAGTATCTCTTTTCCTTCTTTTTTTTTTCCATAA 1296 0.4252 MLLSTDVKVPSNWVKINSTKKTIRYHPPEVVTALDRLSLAKEELTVACRAAWDSFLRDFSKHYAEFQAAVQALAALDCLHSLAILSRNKGYVHPVFVNDCEPVQIQICSGRHPVLETTLQDNFVPNDTNMHADREYCQIVTGPNMGGKSCYVRQVALIAIMAQVGSFVPASSAKLHVLDGIYTRMGASDSIQQGRSTFLEELCETSQILHRCTGHSLVIIDELGRGTSTHDGMAIAYATLHYLLKQKKSLVLFVTHYPKIANLRTEFPCSVAAYHVSHLTSHDDASKTSNLDHEDVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEALVNNRIHSRSGKELLLDAPVLDQEQEPHQLMAQPRDCPCQDFGRAYKEFYSNLKAAILDDDHAKSFQLLENARSIAKKLIGWSSISFPSFFFP. 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07405 431 Gene3D - 3 59 - -
Seca8g07405 431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 337 IPR027417 -
Seca8g07405 431 FunFam DNA mismatch repair protein MSH3 91 364 - -
Seca8g07405 431 Pfam MutS domain V 138 337 IPR000432 GO:0005524|GO:0006298|GO:0030983
Seca8g07405 431 SUPERFAMILY DNA repair protein MutS, domain III 7 88 IPR036187 -
Seca8g07405 431 ProSitePatterns DNA mismatch repair proteins mutS family signature. 216 232 IPR000432 GO:0005524|GO:0006298|GO:0030983
Seca8g07405 431 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 7 359 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Seca8g07405 431 Gene3D - 91 368 IPR027417 -
Seca8g07405 431 SMART mutATP5 135 334 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07405 Seca-Chr8 170989005 170992411 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07405 K08736 - gmx:100789883 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07405 8 170989005 170992411 Seca8g07405 8 170989005 170992411 ECH