Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07400 ATGGTTAAGGTAACTATAGTTGGAAGGGCAAGCGATGGATTACCTCTAGCACAAGGACTAAGACATATGAATGAAGAGAATGGCTATCTTTCATGTTACAGGCAACAAGCAGAGTTCATTCTCCAAGAAATTTCAAAGGGATCATTGACGGCTTCCAAAATGACCATTCGCATTGATCATTACTGTTTCAACTACTTGGTCGAGAATGGAGTTGTTTTCATTGTTTTGTGTGAGTCCACGTACCCAAGAAAACTGGCTTTCCATTACCTACAAGATATACAAAAGGAATTTGAGAAGTTTGATAAAACCCTGATAGGCAAAATTACAAGACCATACAGCTTTGTCAAATTCGGTAATTCCCTTGAACAATTAGTATGCTAA 381 0.378 MVKVTIVGRASDGLPLAQGLRHMNEENGYLSCYRQQAEFILQEISKGSLTASKMTIRIDHYCFNYLVENGVVFIVLCESTYPRKLAFHYLQDIQKEFEKFDKTLIGKITRPYSFVKFGNSLEQLVC. 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07400 126 SMART Longin_2 36 120 IPR010908 -
Seca8g07400 126 ProSiteProfiles Longin domain profile. 6 121 IPR010908 -
Seca8g07400 126 CDD Longin 5 125 IPR010908 -
Seca8g07400 126 SUPERFAMILY SNARE-like 1 124 IPR011012 -
Seca8g07400 126 Pfam Regulated-SNARE-like domain 37 118 IPR010908 -
Seca8g07400 126 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 122 IPR044565 GO:0005484|GO:0006888|GO:0006890
Seca8g07400 126 Gene3D Longin domain 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07400 Seca-Chr8 170945584 170946307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07400 16 99 Miscellaneous Gene Families AT3G54300 30.952 4.46e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07400 K08517 - gmx:100781527 218.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07400 8 170945584 170946307 Seca8g07400 8 170945584 170946307 ECH