Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06959 ATGGCACTCTCGCTCTCGCGCCTTCGTCACTCTCTCATCTCTCGCTCCCTTCGTCTCCTCTCTTCCTCTACCAGATCCCTTTCTCGAACTTCTAACTCATGGAATTTTTCTGTGGGTCGCAATGAGAGTCTAAGGCCTGCATCTTGGTCTAGGTATACTGGAGTTTGTGATAGATCTTTGAAGTCAAAGTGGATTGATGTCAAGTACTTCTCATCTTCAGATTCTTCACATATAGTCCTTGGAATGCCAGCTTTATCTCCTACAATGACCCAAGGTAATATTGCAAAATGGAGGAAGAAAGAAGGAGATAAGATAGAAGCTGGTGATGTACTATGTGAAATTGAAACTGACAAAGCTACTCTTGAATTTGAAAGTCTTGAAGAGGGATTTCTGGCTAAGATATTGGTACCTGAAGGTTCAAAGGACGTGCCTGTTGGACAACCAATTGCAATAACAGTTGAGGATGAGAATGACATTCAAAATGTTCCTGCTTCCTTGGGGGGTGAGACCAGGGTTGAAGAGAAGACACCAACACATCAGGATGTCACAGATGAGGAGAGGAAAGCAGAATCAACTTCTACTGCAATTAATGCATCAGAACTTCCACCTCATGTCCTTGTTGAAATGCCAGCTTTGTCCCCAACAATGAACCAAGGTAACATTGCTAAATGGAGGAAAAAAGAAGGAGAAAAGATTGAAGTGGGTGACATATTATGTGAGATAGAGACAGATAAAGCCACACTTGAATTTGAAACTCTGGAAGAGGGGTACCTGGCTAAGATACTTGCCCCAGAAGGTACAAAAGAAGTGGCAGTGGGGCAGCCTATTGCAATAACAGTGGAAGACGCAAGTGATATTGAAGCCATAAAGAATTCTAGTAGCAGCAGCTCAGCTGGCCAACAAGAGAAGGCTACCCAACGTGACACTAAAAGTGAGGTCAAAGCTCAGAAATCCACTACAACACGAATCAGCCCAGCTGCAAAATTGCTAATTACAGAATATGGATTGGATGCATCAACGTTGAATGCAACTGGTCCTTACGGCACCCTACTGAAAGGGGATGTTCTTTCTGCAATTAAGTCAGGAAAATCGTCTCCAAAACCTGCTTCATCTAAAGAAAAGGCACCATCATCTCAAAGTCATCAAGTTGCAGCTTCACAAGAGACAAAGTCTGACTTAAAGCAGTCAGATGCTTATGAAGATTTTCCCAATAGTCAAATTCGCAAGGTGATTGCTAAAAGGTTATTGGAATCAAAGCAAAATACACCACACTTATATTTATCATCAGATGTTATACTAGATCCTCTTCTTTCCCTTCGAAAGGATCTAAAAGAGCAGTATGACGTTAAAGTTTCAGTGAATGACATTATTATCAAAGTTGTTGCAGCTGCTCTCAGAAATGTACCAGAAGCAAATGCATACTGGGATGCTGAGAAGGGTGAGGTCATTTTATGTGATTCTGTTGACATATTGATAGCAGTTGCCACTGAGAAGGTAATTGATGGTTGTTTAACTGTCAGTATTATTATACACAGCACTCAAACCTTTTGTGTGGATACAGGGCTTGATGACTCCAATAATAAAAAATGCTGA 1593 0.4137 MALSLSRLRHSLISRSLRLLSSSTRSLSRTSNSWNFSVGRNESLRPASWSRYTGVCDRSLKSKWIDVKYFSSSDSSHIVLGMPALSPTMTQGNIAKWRKKEGDKIEAGDVLCEIETDKATLEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDENDIQNVPASLGGETRVEEKTPTHQDVTDEERKAESTSTAINASELPPHVLVEMPALSPTMNQGNIAKWRKKEGEKIEVGDILCEIETDKATLEFETLEEGYLAKILAPEGTKEVAVGQPIAITVEDASDIEAIKNSSSSSSAGQQEKATQRDTKSEVKAQKSTTTRISPAAKLLITEYGLDASTLNATGPYGTLLKGDVLSAIKSGKSSPKPASSKEKAPSSQSHQVAASQETKSDLKQSDAYEDFPNSQIRKVIAKRLLESKQNTPHLYLSSDVILDPLLSLRKDLKEQYDVKVSVNDIIIKVVAAALRNVPEANAYWDAEKGEVILCDSVDILIAVATEKVIDGCLTVSIIIHSTQTFCVDTGLDDSNNKKC. 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06959 530 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 322 359 IPR004167 GO:0016746
Seca8g06959 530 MobiDBLite consensus disorder prediction 361 398 - -
Seca8g06959 530 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 316 361 IPR036625 GO:0016746
Seca8g06959 530 SUPERFAMILY Single hybrid motif 204 297 IPR011053 -
Seca8g06959 530 CDD lipoyl_domain 82 151 - -
Seca8g06959 530 Gene3D - 322 364 IPR036625 GO:0016746
Seca8g06959 530 ProSiteProfiles Biotinyl/lipoyl domain profile. 77 153 IPR000089 -
Seca8g06959 530 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 195 498 IPR045257 GO:0006086|GO:0045254
Seca8g06959 530 SUPERFAMILY Single hybrid motif 77 165 IPR011053 -
Seca8g06959 530 MobiDBLite consensus disorder prediction 363 398 - -
Seca8g06959 530 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 102 131 IPR003016 -
Seca8g06959 530 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 229 258 IPR003016 -
Seca8g06959 530 Pfam e3 binding domain 322 356 IPR004167 GO:0016746
Seca8g06959 530 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 399 509 IPR001078 GO:0016746
Seca8g06959 530 Gene3D - 201 305 - -
Seca8g06959 530 Gene3D - 71 175 - -
Seca8g06959 530 Pfam Biotin-requiring enzyme 80 151 IPR000089 -
Seca8g06959 530 Pfam Biotin-requiring enzyme 207 278 IPR000089 -
Seca8g06959 530 MobiDBLite consensus disorder prediction 172 191 - -
Seca8g06959 530 ProSiteProfiles Biotinyl/lipoyl domain profile. 204 280 IPR000089 -
Seca8g06959 530 MobiDBLite consensus disorder prediction 161 196 - -
Seca8g06959 530 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 200 304 - -
Seca8g06959 530 MobiDBLite consensus disorder prediction 289 304 - -
Seca8g06959 530 SUPERFAMILY CoA-dependent acyltransferases 394 511 - -
Seca8g06959 530 CDD lipoyl_domain 207 278 - -
Seca8g06959 530 Gene3D - 383 518 IPR023213 -
Seca8g06959 530 MobiDBLite consensus disorder prediction 289 319 - -
Seca8g06959 530 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 73 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06959 Seca-Chr8 164925195 164937155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06959 197 497 Acyl Lipid Metabolism Gene Families AT1G54220 40.061 4.85e-63 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06959 K00627 - gmx:100800280 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06959 8 164925195 164937155 Seca8g06959 8 164925195 164937155 ECH