Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06758 ATGCCAGTTGAATCGCAAATTATAAAGCCTATCGCGAAGGGAATCGTTCACAGAATCTGCGCCGGTCAAGTGATCCTCGACCTCTCTTCTGCGGTTAAGGAACTCGTCGAAAACAGCTTGGACGCCGGCGCCACCAGCATCGAAATCGCTCTCAAGGACTTCGGCGAAGAATGGTTTCAGGTCATCGACAACGGCTGCGGCATTTCCCCCAGCAATTTCAAGGTTCTTGCACTCAAGCATCATACCTCAAAACTAGCGGAATTTCATGATCTTCAGTCTCTGACCACTTTTGGCTTCAGAGGAGAGGCGCTGAGTTCCCTTTGTGCTTTGGGCAACTTGACCGTTGAAACAAGAACTGTGAACGAACCTGTTGCCACGCACTTGACTTTTGACCATTTGGGTGTTCTAGTATCCGAAAGGAAAACCGCAAGACAAATTGGAACTACTGTTACTGTTAAAAAACTGTTCTCCAATCTTCCTGTACGAAGCAAAGAGTTTAGACGTAACATACGCAAGGAATATGGCAAGTTGGTTTCTCTGTTGAATGCATATGCCCTTATGGCAAAAGGTGTTCGTTTTGTCTGCACCAACACAACTGCTAAAAATGCAAGGTCTGTGGTACTTAAAACTCAAGGAAGTGATTCTCTAAAAGATAGTATCATAACAGTGCTTGGCATGAACACTTTCAACTGCTTAGAGCCGGTGACTTTAAGTATATCAGAGAGTTGCAAAGTTGATGGTTTTCTTTCCAAGTCTGGACAGGGTAATGGACGCAGTTTGGGAGATAGGCAGTATTTTTTTGTAAACGGTAGACCAGTGGATATGCCTAAAGTCAGCAAACTTGTGAATGAGTTATATAGAAGTGCAAACTCTAAACAATATCCCATTGCAATCTTGAATTTTACAGTTCCTACAAGAGCATATGATGTCAATGTTACTCCTGATAAGAGGAAAGTGTTTCTTTCTGAAGAAACTTCCATATTGCAATCCCTGAGAGAGGGCTTTCAACAAATTTATTCTGCGAGTAATGTCTGTTATTCTGTGAACGAAATTATGCAGCCTACTGCAAAAGAAGAACGTGTTGAGTTGCTTCCTTCTCATAGGAATTCTCTTATCGAAATAAAACCATCATCTCCTAATGTCAGTCTTCCTCAGGAAGAACATTATACTGAGTGCAAGAATGGTAGTATTTCTCAGGATGAGCATAATACTGGCTGCAACAGTGATAGTGCTTCTCCCGATAAGCATAAGGAGAAACACATTACTGATTCCGAAAATGCTTCTGAATCTGTTAATGATGATCAATGCTCACACGTTGAAGAAGGGTTAATTCGGGAGAAAGATGCGCACACCACTTTAAGGGATGATAATTGTAGAAGACAGTCAGCGTACACTTCAAGGACAGTTGAGAGTGCGAGAACTTCTAATAAATATTCATATAATCATTCAAAACATGTTCAGTCAACGCTTAACACATTTGTTACTGTGAATAAAAGAAATCGTGATAGCATCATTACACCTATATCTGAAGTGCCTGTCCTTAGAAATCAAGCTCCTCGTTGTCAATTGAAGACTGGAAATACTGAAAGACATGACTTTATTATGAGATCATCACTTCATTTAGACCAACTTGATGGAACTTCTAAGCTGGGTGAGATTGAATCATCGCAGCAACTTAATTCTGACAACGTCATCAATATAAATGAAAATTCAGTTTCTTTTAGAGGTGACTCTACTGATGGAGAACCTAAAATGGAATTATATCAAGAGAATAATACATCTCTAGCTGATACAGCATCAATCGCTCCATCTAGCAATGATCTAATCAATAATACAAAGCATGTTTTGGTCTCAAACCCTCCATCACCTTCATCGCCTGTACAATTAGATTCTTCTAAGTCTTCTGGTCAGAAGATATGCTCCAACATGCAATTTTCTTTTCAAGACCTTAAGAATAGGAGAGAGAAGAGGCTTTCTTTGATGCGGTCCAGTAAATATAGATGTGGAAAAGCTGACGTCAAAAGTCACTATATGGCTGCAACTTTGGAGCTTTCACAAACAGAAATTGAACAACAGAAAGAAAGGGCTTTAGCAGCAGCGGCTACTGAACTGGAAAGATTTTTCAAGAAGGAAGACTTCAGCAGAATGAAGGTGATTGGGCAATTCAATCTTGGATTTATCATTGGTAAATTGGATCAAGATTTATTCATTGTAGATCAGCATGCTGCTGATGAGAAGTACAATTTTGAGTGTCTGTCCCAATCTACCATCTTGAACCAACAGCCTCTGCTAAGGCCAATAAGATTGGAGTTATCCCCTGAAGAAGAAATAGTTGCTTCAATGCACATGGACATAATCAGGAAGAATGGATTTACTTTGGAAGAGGATCCAAATGCCCCACCTGGATGCCGTTATAAATTAAAGTCTATCCCCTTCAGTAAAAACACCATGTTTGGAATTGAAGATGTTAAGGAGCTGATCTCTATCCTGTCTGATGGTGATGGTCATGGGGAATGTTCCATTGTTGGTAGTTATAAACTGGACACCTCAGATTCCATTTGCCCTTCAAGAGTTCGTGCAATGCTGGCATCACGTGCATGTCGATCATCAATTATGATTGGTGATGCACTTGGAAGAAATGAAATGCAGAAGGTACTTGAGCATTTGGCTGGGCTAAAATCCCCATGGAACTGTCCCCATGGCAGGCCGACCATGCGCCATTTAGTGGATTTGACAAAAATTCATAAGCAGTCGGAACTAACAATGCTGCCCCTTTCCCTTCTCAAGACTGCCCAAGGGCACCCAATGTTGGTGGAACTGAAAAATGGGGAGACTTATAATGGCCATTTGGTTAATTGTGATACATGGATGAACATCCATCTTAGAGAAGTCATATGTACCTCTAAAGATGGAGATAGATTTTGGCGTATGCCTGAATGCTACATTCGTGGCAATACAATTAAGTACCTCCGGGTTCCTGATGAGGTCATTGACAAAGTCCAGGAAGAAACCAAGAGCCGCACCGGTAAGCCTTGTTACCTTGTTTTGGCACCTAGTTGGTTGTTCATAATCATATCGATATTTAAATTGACTAGGTGA 3099 0.4085 MPVESQIIKPIAKGIVHRICAGQVILDLSSAVKELVENSLDAGATSIEIALKDFGEEWFQVIDNGCGISPSNFKVLALKHHTSKLAEFHDLQSLTTFGFRGEALSSLCALGNLTVETRTVNEPVATHLTFDHLGVLVSERKTARQIGTTVTVKKLFSNLPVRSKEFRRNIRKEYGKLVSLLNAYALMAKGVRFVCTNTTAKNARSVVLKTQGSDSLKDSIITVLGMNTFNCLEPVTLSISESCKVDGFLSKSGQGNGRSLGDRQYFFVNGRPVDMPKVSKLVNELYRSANSKQYPIAILNFTVPTRAYDVNVTPDKRKVFLSEETSILQSLREGFQQIYSASNVCYSVNEIMQPTAKEERVELLPSHRNSLIEIKPSSPNVSLPQEEHYTECKNGSISQDEHNTGCNSDSASPDKHKEKHITDSENASESVNDDQCSHVEEGLIREKDAHTTLRDDNCRRQSAYTSRTVESARTSNKYSYNHSKHVQSTLNTFVTVNKRNRDSIITPISEVPVLRNQAPRCQLKTGNTERHDFIMRSSLHLDQLDGTSKLGEIESSQQLNSDNVININENSVSFRGDSTDGEPKMELYQENNTSLADTASIAPSSNDLINNTKHVLVSNPPSPSSPVQLDSSKSSGQKICSNMQFSFQDLKNRREKRLSLMRSSKYRCGKADVKSHYMAATLELSQTEIEQQKERALAAAATELERFFKKEDFSRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFECLSQSTILNQQPLLRPIRLELSPEEEIVASMHMDIIRKNGFTLEEDPNAPPGCRYKLKSIPFSKNTMFGIEDVKELISILSDGDGHGECSIVGSYKLDTSDSICPSRVRAMLASRACRSSIMIGDALGRNEMQKVLEHLAGLKSPWNCPHGRPTMRHLVDLTKIHKQSELTMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTGKPCYLVLAPSWLFIIISIFKLTR. 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06758 1032 Gene3D - 227 345 IPR014721 -
Seca8g06758 1032 SMART MutL_C_2 718 877 IPR014790 GO:0005524|GO:0006298
Seca8g06758 1032 SUPERFAMILY Ribosomal protein S5 domain 2-like 204 339 IPR020568 -
Seca8g06758 1032 SMART DNA_mis_repair_2 220 340 IPR013507 GO:0005524|GO:0006298|GO:0030983
Seca8g06758 1032 Pfam LSM domain 927 991 IPR001163 -
Seca8g06758 1032 CDD MutL_Trans_hPMS_2_like 215 340 - -
Seca8g06758 1032 Pfam MutL C terminal dimerisation domain 717 877 IPR014790 GO:0005524|GO:0006298
Seca8g06758 1032 ProSitePatterns DNA mismatch repair proteins mutL / hexB / PMS1 signature. 98 104 IPR014762 -
Seca8g06758 1032 SUPERFAMILY Sm-like ribonucleoproteins 924 1004 IPR010920 -
Seca8g06758 1032 MobiDBLite consensus disorder prediction 372 410 - -
Seca8g06758 1032 FunFam Mismatch repair endonuclease pms1, putative 758 872 - -
Seca8g06758 1032 NCBIfam DNA mismatch repair endonuclease MutL 8 493 IPR002099 GO:0005524|GO:0006298|GO:0030983
Seca8g06758 1032 FunFam U6 snRNA-associated Sm-like protein LSm4 922 1004 - -
Seca8g06758 1032 Gene3D - 758 872 IPR042121 -
Seca8g06758 1032 ProSiteProfiles Sm domain profile. 923 996 IPR047575 GO:0003723
Seca8g06758 1032 SMART Sm3 926 992 IPR001163 -
Seca8g06758 1032 MobiDBLite consensus disorder prediction 411 427 - -
Seca8g06758 1032 Gene3D - 922 1004 - -
Seca8g06758 1032 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22 220 IPR036890 -
Seca8g06758 1032 FunFam DNA mismatch repair protein PMS1 226 345 - -
Seca8g06758 1032 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 131 - -
Seca8g06758 1032 FunFam Mismatch repair endonuclease pms1, putative 5 224 - -
Seca8g06758 1032 Gene3D - 5 224 IPR036890 -
Seca8g06758 1032 SUPERFAMILY DNA mismatch repair protein MutL 714 908 IPR037198 -
Seca8g06758 1032 CDD LSm4 923 998 IPR034101 GO:0000398|GO:0000956
Seca8g06758 1032 Pfam DNA mismatch repair protein, C-terminal domain 221 339 IPR013507 GO:0005524|GO:0006298|GO:0030983
Seca8g06758 1032 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 7 913 IPR038973 GO:0006298|GO:0016887|GO:0032300|GO:0140664
Seca8g06758 1032 MobiDBLite consensus disorder prediction 372 437 - -
Seca8g06758 1032 CDD HATPase_MutL-MLH-PMS-like 15 197 - -
Seca8g06758 1032 Gene3D - 721 908 IPR042120 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06758 Seca-Chr8 162388561 162399546 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06758 K10858 - gmx:100802535 1434.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06758 8 162388561 162399546 Seca8g06758 8 162388561 162399546 ECH