Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06651 ATGAATCACGGCCGTCTGGTTTCCGGCGGAGGAAGGCTTCTCCGGTGGCTGTTCACGGCGGCTACGGAGGCCGAGAGACCGGCGAGGAATCCAACCCTTTATCGAAGGTTATCGGAGCTGGAAATGACCGGAGGGAGCGTGTCGCGGACGTTGAACCAGTATGTAATGGAGGGCAAAGCCGTGAGAAAAATAGAGCTCGATAGTTGCGTCAATGAGCTCCGAAAGTATCGCAAATTTCAGCACGCACTTGAGATAATGGAATGGATGGAGATGCGGAAGATTAACTTTACTTGGAAAAATTATGCAGTGCATTTAGATCTTGTGTCCAAAATCAAAGGGTTGGTTGCAGCTGAAAATCACTTCAGCGGTCTTCCTCCTCGTGCCAAGAACAAGTACACATATGGTGCTCTTTTGAACTGTTATTGCAAGGAACTTATGACAGACAAGGCATTGGCTCTTTTTGACAAGATGGATGAACTGGGCTATGTCACTAGTTTGGCTTTCAGCAATCTGATGAGTCTGTATATGAGACTGGGTCAACCCTTGAAAGTTCCTCAGCTGGTGCATGATATGAAGCAGAGGAACATTCCCATGGATTCATTCACATACTATGTCTGGATGAATAGCTGTGCCTCTTTGAATGATCTTGATGGGGTTGAGAGGGTCTATGAGCAGATGAGAAGAGAAGATGGAGACAAAATGGATTGGAAAACGTATAGCAACCTTGCTGCTATCTATGTAAAGGCTAAACAATTTGATAAAGCTGAGTTGATGCTTAGGAAGCTGGAACAAGAGGTGGAGCCACGGGAGCGCGAAGCCTACCATTGCTTACTGAGCCTTTATGCAGGGACTAATAATCTTAAAGAGGTTTATAGAGTATGGGATTCCCTCAAGTCAGTCTCCCCTGTGACCAATCGGAGCTATCTTGTTATGCTTTCTACCCTTAGAAAGCTTAATGATATGGAGGGCATATCAAAATGCTTTAAGGAGTGGGTATCTGGTTGTGTTAGTTATGATATAAGGTTGTTTAGTGTTACAATAAGTGCTTACTTGAGTCAGAACATGGATAAAGAAGCTGCATTGGTCTTTAAGGAGGCCATCAAGAGGAGCAAAGGGCCTTTTTTTAAGATTCGGGAAATGTTCATGATGTTTTTCTTGGAAAAACGTGAATTAGATGGTGCTGTGAGCCACTTAGAGGCGGCACTTTCAGAAGTCATGGATGATGAATGGCGTCCTTCACCACAAGTTGTAAGTGCTTTTCTAAAGTATTACGAAAAAGAAACAGATCTTGATGGTGTTGATGAGTTATGCAAGATTCTCAAGACTCACAACTTTGATGATTCCTGGCTTGAAACTCAAATTGCTGCATCCGAGTCATCTCCTGAAATTCATCAAATATTGAAGGAAGATTCTTATGTCAACCATGCGCATGAGAACTTGCAAGGGGATGTTCATTATGAATAG 1464 0.4344 MNHGRLVSGGGRLLRWLFTAATEAERPARNPTLYRRLSELEMTGGSVSRTLNQYVMEGKAVRKIELDSCVNELRKYRKFQHALEIMEWMEMRKINFTWKNYAVHLDLVSKIKGLVAAENHFSGLPPRAKNKYTYGALLNCYCKELMTDKALALFDKMDELGYVTSLAFSNLMSLYMRLGQPLKVPQLVHDMKQRNIPMDSFTYYVWMNSCASLNDLDGVERVYEQMRREDGDKMDWKTYSNLAAIYVKAKQFDKAELMLRKLEQEVEPREREAYHCLLSLYAGTNNLKEVYRVWDSLKSVSPVTNRSYLVMLSTLRKLNDMEGISKCFKEWVSGCVSYDIRLFSVTISAYLSQNMDKEAALVFKEAIKRSKGPFFKIREMFMMFFLEKRELDGAVSHLEAALSEVMDDEWRPSPQVVSAFLKYYEKETDLDGVDELCKILKTHNFDDSWLETQIAASESSPEIHQILKEDSYVNHAHENLQGDVHYE. 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06651 487 Coils Coil 252 272 - -
Seca8g06651 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Seca8g06651 487 PANTHER OS12G0527900 PROTEIN 26 453 - -
Seca8g06651 487 Gene3D Tetratricopeptide repeat domain 63 229 IPR011990 GO:0005515
Seca8g06651 487 Gene3D Tetratricopeptide repeat domain 230 481 IPR011990 GO:0005515
Seca8g06651 487 FunFam Pentatricopeptide repeat-containing protein mitochondrial 63 272 - -
Seca8g06651 487 Pfam PPR repeat 132 161 IPR002885 -
Seca8g06651 487 Pfam PPR repeat 168 196 IPR002885 -
Seca8g06651 487 Pfam PPR repeat 201 229 IPR002885 -
Seca8g06651 487 Pfam PPR repeat 238 264 IPR002885 -
Seca8g06651 487 NCBIfam pentatricopeptide repeat 201 229 IPR002885 -
Seca8g06651 487 NCBIfam pentatricopeptide repeat 132 163 IPR002885 -
Seca8g06651 487 SUPERFAMILY TPR-like 132 331 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06651 Seca-Chr8 161126781 161128913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06651 32 441 EF-hand Containing Proteins AT1G02150 34.300 1.56e-79 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06651 - - gmx:100781679 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06651 8 161126781 161128913 Seca8g06651 8 161126781 161128913 ECH
Seca8g06651 8 161126781 161128913 Seca8g05132 8 141333602 141334594 PCT