Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06635 ATGGGTACGGAGAGGAAGAGAAAGGTGAGCTTGTTTGATGTGGTGGATGACACTGCTGCCGTGAAGATGGCCAAATCAAACGGCGTTGCAGTCGGCAACAGCCTCATTAACCGGTGGAACGGGAAGCCTTACTCGCAGAGGTACTATGAGATTTTGGAGAAGAGGAAAACCCTCCCCGTTTGGCACCAGAAAGAGGAGTTCTTGCAGGTTTTGAAAGATAACCAGACTCTGATTCTTGTTGGTGAGACTGGTAGTGGCAAAACCACTCAGATCCCTCAGTTTGTTTTGGAAGCTGTTGATTTAGAGACCCCGGATAAACGCAGGAAGATGATGATTGCATGCACTCAGCCTCGTAGAGTGGCTGCAATGTCTGTTTCCCGGCGTGTGGCTGAAGAGATGGATGTGAATATTGGAGAAGAGGTTGGTTATAGCATCAGATTTGAAGATTGCAGTAGTGCAAGGACAGTTTTGAAGTATGTATTGTTTCACCACAGGTATCTAACAGATGGTATGCTTTTGAGAGAAGCAATGACAGATCCACTTTTGGAACGATACAAGGTTATTATTCTTGATGAAGCACATGAAAGGACTTTGGCTACAGATGTGCTGTTTGGCCTTCTTAAGGAAGTGCTTAAAAATAGACCTGACTTGAAGTTGGTTGTTATGAGTGCCACACTTGAAGCTGAAAAGTTTCAGGGCTATTTTTATGGGGCCCCTCTTATGAAAGTTCCTGGAAGGCTACATCCAGTGGAAATTTTCTATACCCAGGAACCAGAAAGGGATTACTTGGAGGCTGCCATTAGGACAGTGGAGCAGATACACATGTGTGAACCTCCTGGAGATATACTTGTTTTTCTGACTGGAGAGGAAGAAATTGAAGATGCATGCCGCAAAATATCAAAAGAAATTGCAAATTTGGGAGACCAGGTGGGCCCTGTGAAAGCAGTACCCTTGTATTCTACTCTTCCTCCAGCTATGCAGCAGAAGATTTTTGAGCCAGCTCCACCCCCACTAAAGGAGGGAGGGCCTCCTGGAAGGAAGATTGTGGTATCAACAAACATAGCAGAAACTTCCTTGACAATTGATGGTATAGTATATGTTATTGACCCTGGATTTGCTAAGCAGAAGGTTTATAACCCTCGAGTCCGTGTTGAGTCTTTGTTGGTGTCTCCAATATCAAAGGCTAGTGCACACCAGAGATCTGGTCGTGCTGGAAGAACTCAACCAGGGAAATGTTTTAGACTTTATACTGAAAAAAGTTTCAATAATGATCTTCAGCCGCAGACCTACCCTGAAATTTTGAGATCTAATCTTGCCAATACAGTTCTTACCTTGAAGAAACTGGGTATAGATGATTTGGTGCATTTTGATTTCATGGACCCTCCTGCCCCTGAGACCTTAATGCGTGCTTTGGAAGTATTGAATTACTTGGGTGCACTGGATGATGATGGTAACTTAACAAAGCTGGGTGAGATTATGAGTGAATTTCCATTGGACCCGCAGATGTCAAAGATGCTTGTTGTTAGTCCTGAATTCAACTGTTCAAATGAGATTCTTTCAATTTCTGCCATGCTATCAGGTATTTGTGTCCTGTTAGGTAGTCATCAGCAACTGTCTTCTCTGGGTTCCATGCCCCCGGTTGGCATGCACCATAGGATTCTAATACCCAATTGCTTTGTCCGGCCTAGGGAGGCACAAAAAGCTGCGGATGAAGCGAAAGCTAGGTTTGGGCACATTGATGGAGATCATCTCACGCTCTTGAATGTATACCATGCCTACAAGCAAAATAATGAGGATTCTTCTTGGTGCTATGATAACTTTGTTAATCATAGGGCACTGAAAGCAGCTGATAATGTTAGACAACAGCTAGTGCGTATCATGGCTCGATTTAACCTGAAGTTATGCAGCACTGACTTCAATAGTCGTGAGTACTATGTCAACATAAGAAAGGCAATGCTGGCAGGATATTTCATGCAGGTGGCTCATCTTGAGCGGACAGGACACTACTTGACAGTGAAAGACAACCAGGTGGTGCACTTGCATCCATCAAATTGCCTGGACCACAAGCCCGAGTGGGTAATCTATAATGAATATGTTCTTACCAGTCGGAATTTTATTCGTACTGTGACAGATATACGCGGGGAATGGTTAGTTGATATAGCACCACATTACTATGATTTGTCTAATTTTCCACAATGTGAAGCAAAGCGTGTGCTTGAGAGGCTTTACAAGAAGCGAGAGAAGGAAAAGGAGGAAGCCAGGAGTCGTAAATGA 2274 0.4389 MGTERKRKVSLFDVVDDTAAVKMAKSNGVAVGNSLINRWNGKPYSQRYYEILEKRKTLPVWHQKEEFLQVLKDNQTLILVGETGSGKTTQIPQFVLEAVDLETPDKRRKMMIACTQPRRVAAMSVSRRVAEEMDVNIGEEVGYSIRFEDCSSARTVLKYVLFHHRYLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVEQIHMCEPPGDILVFLTGEEEIEDACRKISKEIANLGDQVGPVKAVPLYSTLPPAMQQKIFEPAPPPLKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSGICVLLGSHQQLSSLGSMPPVGMHHRILIPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDSSWCYDNFVNHRALKAADNVRQQLVRIMARFNLKLCSTDFNSREYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLERLYKKREKEKEEARSRK. 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06635 757 SMART helicmild6 290 408 IPR001650 -
Seca8g06635 757 Pfam DEAD/DEAH box helicase 64 229 IPR011545 GO:0003676|GO:0005524
Seca8g06635 757 CDD DEXHc_DHX15 46 243 IPR044756 GO:0003724|GO:0005524
Seca8g06635 757 CDD SF2_C_RHA 248 416 - -
Seca8g06635 757 Pfam Helicase associated domain (HA2) 470 586 IPR007502 GO:0004386
Seca8g06635 757 FunFam Predicted protein 259 428 - -
Seca8g06635 757 Gene3D - 247 429 IPR027417 -
Seca8g06635 757 SMART ha2_5 469 587 IPR007502 GO:0004386
Seca8g06635 757 Coils Coil 736 756 - -
Seca8g06635 757 SMART ultradead3 55 253 IPR014001 -
Seca8g06635 757 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 453 541 - -
Seca8g06635 757 FunFam Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 14 246 - -
Seca8g06635 757 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 244 IPR014001 -
Seca8g06635 757 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 648 724 IPR011709 -
Seca8g06635 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 642 IPR027417 -
Seca8g06635 757 Coils Coil 289 309 - -
Seca8g06635 757 Gene3D - 11 246 IPR027417 -
Seca8g06635 757 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 449 IPR001650 -
Seca8g06635 757 PANTHER ATP-DEPENDENT RNA HELICASE 45 729 - -
Seca8g06635 757 Pfam Helicase conserved C-terminal domain 274 407 IPR001650 -
Seca8g06635 757 Gene3D - 454 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06635 Seca-Chr8 160950222 160955332 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06635 K12820 - gmx:100817506 1319.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06635 8 160950222 160955332 Seca8g06635 8 160950222 160955332 ECH