Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06560 ATGGGGTTCCAAATTTTGGTTTTGACGTCTTTGGTAGTGGCTCTGGTAGTTGTTGCTCAACATGGGAACTGCAGGGTTACTACTAGTAGTGCTACATCTGATTTCGTTCAAAGAAATGGTACCCGTTTTATTCTGAATGGGAGGCCATATTACTTGAACGGCTTCAATGCACATTGGTTAATGACCACTGCATCTGACCCATCTACAAGGTCCAAGGTCACTTACACTTTCCAACAAGCTTTCCGGCGTGGTTTAAACGTAGCAAGGACATGTGCTTTCAACGATGGAGGTTTTAGAGCCCTTCAAATTTCTCCTGGTTACTATAATGAAAACGTCTTTAGGGCTGTGTTGACAAGAAATAACACCATAACTGGGTTGGTATATAAGGATGACCAAACCATTTTTTCATGGGAGCTTATGAATGAACCCCGTTCCGAAAGTAACTCATCAGAAAAAATAATTCAGGGTCTTATTTACATATCTCTCACCACTCATAGAAACAGTAACATACATTGCTTATTATCGGATTGGGTTAGTGAGATGGCGGCCTATGTAAAATCCATTGATAGCAATCATTTGTTGGAAGTAGGGCTTGAAGGGTTCTATGGTGATTCAATGCCACAAAAGAAGCAGTTCAATCCTGGATACCAAGTTGGAACTGATTTTATCTCCAACAACCAAGTTCCTCAAATCGATTTTGCCACCATTCATGTATACCCTGAACAATGGTTATCAAACTCCGACGAGGGAGCCCAAAATGCATTTGTTAAAAGATGGGTCCAAGCTCATATCCAGGACTCAAATGATGTTTTAGGAAAGCCCATTATAACCGAGTTTGGGAAGTCTTCAAACTCATCTGGATATCATGTAGAACAAAGGGGTAGTTACTTTAACACTTTGTTTGGTTGTAGGGTAGAAATAGAGAAGAGAGAAGTAGGAAAGAGAGAAATAGAGAAGAGATCAAGATAA 969 0.4014 MGFQILVLTSLVVALVVVAQHGNCRVTTSSATSDFVQRNGTRFILNGRPYYLNGFNAHWLMTTASDPSTRSKVTYTFQQAFRRGLNVARTCAFNDGGFRALQISPGYYNENVFRAVLTRNNTITGLVYKDDQTIFSWELMNEPRSESNSSEKIIQGLIYISLTTHRNSNIHCLLSDWVSEMAAYVKSIDSNHLLEVGLEGFYGDSMPQKKQFNPGYQVGTDFISNNQVPQIDFATIHVYPEQWLSNSDEGAQNAFVKRWVQAHIQDSNDVLGKPIITEFGKSSNSSGYHVEQRGSYFNTLFGCRVEIEKREVGKREIEKRSR. 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06560 322 Pfam Cellulase (glycosyl hydrolase family 5) 128 294 IPR001547 GO:0004553|GO:0071704
Seca8g06560 322 Gene3D Glycosidases 31 113 - -
Seca8g06560 322 PANTHER - 112 306 IPR045053 GO:0004553
Seca8g06560 322 SUPERFAMILY (Trans)glycosidases 35 291 IPR017853 -
Seca8g06560 322 Gene3D Glycosidases 114 306 - -
Seca8g06560 322 FunFam Uncharacterized protein 178 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06560 Seca-Chr8 160126968 160129106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06560 22 301 Glycoside Hydrolase AT1G02310 44.037 2.01e-80 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06560 K19355 - gmx:100791612 264.233