Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06558 ATGAAAAGGGAGGCGTCACTTTCTTTTTTTGTGGAGTACTTGGAGAGATACTACTTTTTAATATGTTTTGCTGTATACATACATTCAGAAATGGCTGCACTCCGTTCTAGTTCTGCTGGTCATAGTAGTTTTGCTGACTGGATGAGAGACAGGCCAGAGCTCTACAGTATTATTCGCAGGTTGCTGAGGAGAAATCCAATGGGTGCACTTGGATATTCCAGTTTGAAACCATCTCTAAAGAAGATAGATGAATCTACTGATGGTCGCCCTTCTGAGATGGGTGTGGTTGCTGCCTTGAGAAGTGGCGAGGTTCTTGGCAGTCAAACTGTTCTGAAGAGCGATCATTGTCCTGGATGTCAAAATCCAAGATTACCTGAGAGAGTAGAGGGGGCACCTAATTTCAGAGAAGTTCCCGGGTTTCCAGTTTATGGAGTGGCAAATCCAACAATTGATGGTATTCGATCTGTCCTTCGTAGGATTGGTAGTTCCAAAGGTGGACGCCCAGTACTTTGGCATAATATGAGGGAAGAACCTGTTATTTACATCAATGGGAAACCATTTGTTCTTCGTGAAGTCGAAAGGCCGTACAAAAACATGCTAGAATACACGGGTATTGGTCGTGAAAGGGTGGAGAAAATGGAAGCTCGATTAAAAGAAGATATCCTACGGGAAGCTGAACAGTATGGCAGTGCCATAATGGTTATTCATGAAACAGACGATGGGCATATATATGATGCTTGGGAGCATGTCTCCTCTGATGTGATTCAAACCCCGCTTGAAGTTTTTAAAAGCCTTGAGGCTGATGGATTCCCCATTAAGTATGCACGTGTTCCCATCACTGATGGAAAAGCTCCTAAAAGTTCTGACTTTGACACACTGGCATTTAATATTGCTTCTGCTGCAAAGGACACTGCTTTTGTTTTCAATTGTCAGATGGGTAGGGGCAGGACAACCACTGGTACTGTCATAGCTTGCCTTGTGAAACTTCGAATTGATCAAGGGAGGCCCATTAAAATACTGGGAGATGATGTGACCCAGGAAGAAGTGGATGGAGGTTCTTCAAGTGGAGATGAAACTGGGGGTTATGCTTCTGTATTAAACCTCGACACTTTGCAAATAAAGACAGATGAGAAACAAAGTCATGCTTTTGGTATAAATGACATCCTCTTGTTATGGAAGATAACAGCTTTTTTTGATAATGGGGCGGAGTGCCGGGAATCCTTAGATGCTATTATTGATAGATGTTCTGCACTTCAAAACATTCGACAAGCTGTTCTGGAATATAGAAAAGTATTCAATCAACAGCATGTTGAGCCTAGGGTAAGGAGGGTGGCATTGAATCGTGGTGCTGAGTACTTGGAGCGGTACTTCCGTCTTATTGCTTTTGCTGCATATCTTGGAAGTGAAGCATTTGATGGGTTTTGTGGAGATGGAGAATCCAAAATGACATTTAAGAATTGGTTGCATCAGAGGCCAGAGGTGCAGGCTATGAAATGGAGTATAAGATTGAGACCAGGGCGATTTTTCACTGTTCCCGAAGAGTTAAGAGCACCACAAGAGTCTCAGCATGGAGATGCAGTGATGGAGGCCGTTGTCAAGGCCCGAAGTGGTTCAGTTCTGGGAAAAGGCTCCATACTGAAAATGTATTTCTTTCCTGGTCAGAGAACTTCCAGCCACATACAAATTCCTGGTGCACCACACGTTTATAAGGTTGATGAACACTCTGTGTATAGCATGGCAACTCCAACCATCTCTGGTGCCAAGGAGATGCTAGTATATTTGGGTGCTAAGCCTAAAGCAAAAGCCTCAACTGCTCGGAAAGTAATATTGACTGATCTGAGAGAGGAAGCAGTTGTCTATGTCAATGGCACTCCCTTTGTCCTGAGGGAGTTAAACAAACCCGTTGATACACTCAAGCATGTGGGAATCACTGGTCCTGTGGTGGAACACATGGAAGCAAGGTTGAAAGAAGATATACTAGCTGAGATTAGACAGTCTGGTGGGCTGATGCTGTTTCACCGTGAAGAATATAACCCTTCAACAAATCAGTCTAGTGTGGTTGGATACTGGGAAAACATTTTGGCTGATGATGTGAAAACACCTGCAGAAGTTTATTCTGCTCTGAAAGATGAGGGTTATGATATTGTCTATCGGAGGATACCATTAACAAGAGAGAGAGATGCTTTGACCTCTGATGTTGATGCAATACAGTACTGTAAAGACGACTCTGCAGAGAGTTACCTTTTTGTATCACACACAGGTTTTGGTGGAGTTGCATATGCAATGGCCATCATCTGTATTAGGCTCGGTGCAGAAGCAAACTTTGCATCCAAAGTCCCACAGCCATTGTTTGGTCCTCACCAATGGGGTGCGACTGAAGAGAACTTGCCTTCTCGAGCTTCTAATGAAGCAGCACTCAGGATGGGTGACTATCGTGACATTTTGAGCCTTACAAGAGTCCTCATACACGGTCCCCAAAGCAAAGCAGATGTTGACACTATTATTGAAAGATGTGCAGGTGCAGGGCATCTACGAGATGATATTCTTTATTACAGTAAAGAATTTGAAAAGTTTACTGATGGTGATGATGAGGAACGGGCGTATCTTATGGACATGGGTATCAAGGCTTTGAGGCGGTATTTTTTCCTTATCACATTCAGATCTTATCTTTACTGCACCTCTCCTGCCAATATGAAATTTGCTGCATGGATGGATGCAAGACCTGAGCTTGGTCATCTATGTAACAATCTTAGAATTGATAAATAA 2766 0.432 MKREASLSFFVEYLERYYFLICFAVYIHSEMAALRSSSAGHSSFADWMRDRPELYSIIRRLLRRNPMGALGYSSLKPSLKKIDESTDGRPSEMGVVAALRSGEVLGSQTVLKSDHCPGCQNPRLPERVEGAPNFREVPGFPVYGVANPTIDGIRSVLRRIGSSKGGRPVLWHNMREEPVIYINGKPFVLREVERPYKNMLEYTGIGRERVEKMEARLKEDILREAEQYGSAIMVIHETDDGHIYDAWEHVSSDVIQTPLEVFKSLEADGFPIKYARVPITDGKAPKSSDFDTLAFNIASAAKDTAFVFNCQMGRGRTTTGTVIACLVKLRIDQGRPIKILGDDVTQEEVDGGSSSGDETGGYASVLNLDTLQIKTDEKQSHAFGINDILLLWKITAFFDNGAECRESLDAIIDRCSALQNIRQAVLEYRKVFNQQHVEPRVRRVALNRGAEYLERYFRLIAFAAYLGSEAFDGFCGDGESKMTFKNWLHQRPEVQAMKWSIRLRPGRFFTVPEELRAPQESQHGDAVMEAVVKARSGSVLGKGSILKMYFFPGQRTSSHIQIPGAPHVYKVDEHSVYSMATPTISGAKEMLVYLGAKPKAKASTARKVILTDLREEAVVYVNGTPFVLRELNKPVDTLKHVGITGPVVEHMEARLKEDILAEIRQSGGLMLFHREEYNPSTNQSSVVGYWENILADDVKTPAEVYSALKDEGYDIVYRRIPLTRERDALTSDVDAIQYCKDDSAESYLFVSHTGFGGVAYAMAIICIRLGAEANFASKVPQPLFGPHQWGATEENLPSRASNEAALRMGDYRDILSLTRVLIHGPQSKADVDTIIERCAGAGHLRDDILYYSKEFEKFTDGDDEERAYLMDMGIKALRRYFFLITFRSYLYCTSPANMKFAAWMDARPELGHLCNNLRIDK. 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06558 921 FunFam Paladin isoform B 547 787 - -
Seca8g06558 921 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 96 329 IPR029021 -
Seca8g06558 921 PANTHER TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE 96 839 - -
Seca8g06558 921 FunFam Paladin isoform A 110 343 - -
Seca8g06558 921 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 529 733 IPR029021 -
Seca8g06558 921 Gene3D Protein tyrosine phosphatase superfamily 547 777 IPR029021 -
Seca8g06558 921 Gene3D Protein tyrosine phosphatase superfamily 112 345 IPR029021 -
Seca8g06558 921 CDD PTP_paladin 100 415 - -
Seca8g06558 921 SMART PTPlike_phytase_2 611 769 - -
Seca8g06558 921 SMART PTPlike_phytase_2 172 328 - -
Seca8g06558 921 Pfam Inositol hexakisphosphate 172 328 - -
Seca8g06558 921 Pfam Inositol hexakisphosphate 612 767 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06558 Seca-Chr8 160109380 160123670 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06558 - - gmx:100788113 1701.41