Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06539 ATGGGGCACAAGTATTTGTGGGTGGCTTTCTGTTTATGGGCTTTAACATGCTCACTTCTTCCTTCTTTCTCCTGTGGACTTATGAGAATTAGTTTGAAGAAGAGAACCCTAGATCTTCATAGTATTAAAGCTTCTAGAATGGTAAGAGAAAAGCTAAGATTAGGCAGACCTGTGGTGGGTGCATATGATCAGTATATTGGTAAGCCAACCGATGAGAGCATAGTACCTTTGAAGAATTATTTGGATGCACAATATTATGGAGAGATTGGAATTGGCACACCCCCACAGACCTTTAATGTCATATTTGATACTGGTAGTTCCAACCTCTGGGTTCCATCATCAAAGTGCTATTTTTCTCTTGCCTGCTATACTCACCATTGGTACAAGTCAAAGAAATCCAAAACATACACCAAAAATGGAACATCATGTAAAATAAGATATGGATCTGGATCAATATCTGGTTTTTTCAGTCGAGATAATGTTAAAGTTGGTGATGTTGTTGTCAAGAATCAGGATTTCATTGAGGCTACCCGAGAAGGAAGTCTTGCCTTTATTTTAGCAAAGTTTGATGGACTACTTGGGCTCGGGTTTCAGGAGATCTCAGTTGAAAATGCTGTGCCCGTATGGTACAACATGGTGGAGCAAAATCTTGTAAGTGAGCAGGTGTTCTCTTTTTGGCTCAACGGTAATCCAAAAGCCAAAAAGGGTGGTGAGCTAGTTTTTGGGGGTGTTGATCCGAAGCACTTCAAAGGAAATCATACTTATGTTCCAGTTACTACAAAAGGTTACTGGCAGATTGAAATGGGAGAGTTTTTCATCGGAGGTCTCTCAACAGGTGTTTGTGAAGGTGGTTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACTACTGTTGTGACTGAAATCAACCATGCTATTGGAGCTGAAGGAGTTCTGAGCGTAGAATGTAAGGAAGTTGTTTCTGAATATGGAGAGTTGATATGGGATCTCTTGGTATCAGGGGTACGACCTGGTGATGTATGTTCACAAGTTGGTTTATGTTTTTCCAAGAGGGGCCAATCTAATAGCGTTGGGATTGAAATGGTGACTGAAAAGGAACAGAGAGAGTTGTCAGCTAAAGATACTGCTTTGTGCACTTCCTGTCAGATGCTTGTGGTTTGGATCCAGAATCAACTAAAACAAAAGTCAACCAAGGATATAGTATTCAACTACGTAAATAAGCTATGTGAGAGCTTGCCAAGTCCAAATGGAGAGTCAGTAGTAAGCTGCGATAGCATTTCTCAATTGCCAAACATTACGTTTACTATTGGAGACAAACCTTTCGTCCTCACTCCAGAGCAGGTTAGATTTTGA 1365 0.4081 MGHKYLWVAFCLWALTCSLLPSFSCGLMRISLKKRTLDLHSIKASRMVREKLRLGRPVVGAYDQYIGKPTDESIVPLKNYLDAQYYGEIGIGTPPQTFNVIFDTGSSNLWVPSSKCYFSLACYTHHWYKSKKSKTYTKNGTSCKIRYGSGSISGFFSRDNVKVGDVVVKNQDFIEATREGSLAFILAKFDGLLGLGFQEISVENAVPVWYNMVEQNLVSEQVFSFWLNGNPKAKKGGELVFGGVDPKHFKGNHTYVPVTTKGYWQIEMGEFFIGGLSTGVCEGGCAAIVDSGTSLLAGPTTVVTEINHAIGAEGVLSVECKEVVSEYGELIWDLLVSGVRPGDVCSQVGLCFSKRGQSNSVGIEMVTEKEQRELSAKDTALCTSCQMLVVWIQNQLKQKSTKDIVFNYVNKLCESLPSPNGESVVSCDSISQLPNITFTIGDKPFVLTPEQVRF. 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06539 454 Pfam Saposin-like type B, region 1 381 417 IPR007856 GO:0006629
Seca8g06539 454 SUPERFAMILY Saposin 316 417 IPR011001 -
Seca8g06539 454 ProSiteProfiles Saposin B type domain profile. 378 419 IPR008139 -
Seca8g06539 454 Gene3D - 314 417 - -
Seca8g06539 454 ProSiteProfiles Saposin B type domain profile. 315 355 IPR008139 -
Seca8g06539 454 SMART sapb_4 279 351 IPR008139 -
Seca8g06539 454 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190|GO:0006508
Seca8g06539 454 SUPERFAMILY Acid proteases 17 452 IPR021109 -
Seca8g06539 454 FunFam Lysosomal aspartic protease 71 313 - -
Seca8g06539 454 PRINTS Pepsin (A1) aspartic protease family signature 237 250 IPR001461 GO:0004190|GO:0006508
Seca8g06539 454 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Seca8g06539 454 PRINTS Pepsin (A1) aspartic protease family signature 287 298 IPR001461 GO:0004190|GO:0006508
Seca8g06539 454 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 287 298 IPR001969 GO:0004190|GO:0006508
Seca8g06539 454 Gene3D Acid Proteases 250 454 IPR021109 -
Seca8g06539 454 Pfam Saposin-like type B, region 2 319 351 IPR008138 -
Seca8g06539 454 Gene3D Acid Proteases 28 243 IPR021109 -
Seca8g06539 454 ProSiteProfiles Peptidase family A1 domain profile. 85 454 IPR033121 -
Seca8g06539 454 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 66 452 IPR001461 GO:0004190|GO:0006508
Seca8g06539 454 Pfam Eukaryotic aspartyl protease 84 452 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06539 Seca-Chr8 159850063 159855189 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06539 K08245 - gmx:547993 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06539 8 159850063 159855189 Seca8g06539 8 159850063 159855189 ECH
Seca8g06539 8 159850063 159855189 Seca2g05215 2 138641366 138646280 PCT