Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06524 ATGGGAACTGAAAACCCTGGTCGTCCCACCTTCCCTTCAAGACCACCTTTTGCTGCTGCACAGACTATGACGCCTTTTGCACCAACAGGTGCCGTGGTTGGATCAGAGCCTCCTTCTTTCAGACCCACTCCCCCTGCTCCTCCCTTAGCCTCCACACCATTTTCATCATCTGGTCCTGCAGTTGGACAGGGGACGCCCAGTTTTAGACCTGCGCCGCTGGGACGGTTTAATGACCCCTCAGTGCCGCCTCCTACTTCCAATGTCCCTCCTGCTGGCGGACCTTTCCAGCGTTTTCCAATGCCGCAATTTTCCTCAACTGCTCAAGCACCTCCCCAGCATCCTCCACCTATGGGGCAACCACCAATTCAACCTTCTGCAGGTCAAACACCATCTTTTGTTCCAATGGGGTCTCCCCCATCAAGTGCCACTCCTGCACTTTCAGGTTTGAATGTTCCTCCTCCCGCATTTCAACCATCTTTTCCTGGATATGCACAGAAACAGAATGGTGGTGTACAAATGCAAGCTCCACCTGTGCATTCTTCTCCCCTCTCCAATCAAGGAAATTATGGACCTGCCCCTCCTGCAGCATCTTCACCTTTCCAACCTCATCAAGGAGGTTATGTTCCCCAGCCCCCAGGGGCTGGACCGTTAGGCATCCAGCACATGTCCTCACAAGCATCTGGACCACCTATAGGTGGTGTTCAGGGCTTATCAGAAGACTTCAGTTCGCTCTCAATTCAAACTCGTCCTGGACTCATGGAGCCGTCAGTTGATGCTAAAGAACTGCCAAGGCCATTGGACGGTGATGTGGAGCCAAAGTCTTTAGCTGAGATGTATCCCATGAACTGCCATCCCAGATATATACGACTCACAACCAGTGCAATTCCTAGCTCACAGTCCTTATCTTCAAGATGGCATCTTCCTCTTGGAGCAGTTGTATGTCCACTGGCAGAACCTCCTGATTGGGAAGAGGTGGATGTAGTTAATTTTGCTGCAACTGGTGTCGTACGTTGTAGGAGATGTCGTACATATGTGAATCCATATGTGACATTTACAGAAGCTGGAAGAAAGTTCCGCTGCAACATGTGTGCCTTGGTCAATGAAGTTCCTAGTGAATATTATGCGCAATTAGATGCCACTGGCAGAAGAGTTGATTTGAATCAACGGCCAGAGCTTACAAAGGGTACTGTGGAGTTTGTTGCCCCAGCTGAATATATGGTGCGGCCTCCTATGCCTCCAATATATTTCTTCCTAATCGATGTTTCCATATCTGCGGTTAGAAGTGGAATGATTGAGGTTGTGGCCCAAACAATCAGGTCATGCTTAGACAAGCTGTCTGGCTTTCCACGAACGCAAATAGGGTTTGCAACTTTCGACAGCACAATACATTTTTATAACATGAAGTCATCCTTGACTCAACCACAGATGTTGGTAGTCTCAGATCTGGATGACATATTTGTTCCACTGCCAGATGATCTCCTTGTCAACTTATCAGAATCAAGAAGTGTGGTGGAAACCTTTCTTGATAGTTTGCCGACCATGTTCCAGGACAATGTGAATCTGGAATCTGCTTTTGGTCCTTCTCTTAAGGCAGCGTTTATGGTTATGAGTCAACTTGGAGGGAAATTGTTAATTTTTCAAAACACTCTCCCATCTCTTGGTGTTGGTCGCTTGAAATTACGCGGAGATGATTCTCGTGTTTATGGCACAGATAAAGAACATCTATTAAGATTGCCAGAAGATCCCTTTTACAAGCAAATGGCTGCTGAGTTTTGTAAATACCAGATCTCAGTGAATGTGTATGCATTCAGTGATAAATACTCTGACATAGCCTCCTTAGGAACTTTGGCAAAGTATACTGCCGGTCAGGTGTATTATTATCCAGCTTTCCAATCAGTCATTCATGGGGACAAACTAAGAAGCGAGTTAAGGAGAGATCTTACCAGAGAAACTGCTTGGGAAGCAGTAATGCGAATTAGATGTGCAAAAGGTGTCCGTTTCACAACATATCATGGAAACTTTATGCTAAGGTCCACTGATTTGTTAGCACTTCCAGCTGTAGATTGTGACAAAGCCTTTGCCATGCAGTTATCCCTAGAAGAAACATTATTGACAACTCAGACAATGTATTTCCAAGTTGCGTTGCTATATACTGCATCTTGTGGAGAAAGACGTATCAGAGTACACACAGCTGCAGCTCCAGTAGTTACAGACTTGGTAGAGATGTACCGCCTGGCTGATACTGGTGCAATAATATCTCTGTTTAGTAGGCTTGCAATTGAGAATACATTGTCCCGTAAACTGGAAGAAGGACGGAGTGCTGTGCAACTAAGAATTGTGAAAGGCCTCCGAGAGTATCGAAATCTCTATGCTGTGCAACATCGCTTGGCAAACAAAATCATATATCCTGAATCATTAAAGTTCCTACCCTTGTATGGCTTAGCTCTTTGTAGATCAACACCTCTCCGTGGAGGGTATGGTGATGTTGCACTAGATGAACGGTGTGCAGCTGGACACACAATGATGACTCTACCAATAAAAAGGCTGTTGAAACTTCTCTATCCTAATTTGATTCGACTTGATGGACATCTTCTGAAGGCATGTGCTGATGAAATGAAAAGCATTGATAGAAGGTTACCTTTGACTGGTGAAAGCTTGGATTCTAGAGGCCTTTACATATATGATGATGGCTTCCGATTCATTATATGGTTTGGTAGAGTGATTTCGCCTGATATAGCTAAGAACTTACTCGGGACAGACTTTGCAGCAGAGTTATCAAAGGTTACTCTTAAGGAGCATAATGATGAAATGTCAAGGAGACTGGTGAAGGTACTTGAGAAGTTCAGAAATACTGATCGTGCATATTACCAGCTGTGCCACCTTGTGAGGCAAGGTGAACAGCCCAGAGAAGGGTTCCTTCTTCTTTCAAACCTTGTTGAGGACCAAATGGGTAGTTATAGTGGGTATGCTGATTGGATGCTACAAATTTCCCGACAAGTGCAGCAGTCATAA 3012 0.4525 MGTENPGRPTFPSRPPFAAAQTMTPFAPTGAVVGSEPPSFRPTPPAPPLASTPFSSSGPAVGQGTPSFRPAPLGRFNDPSVPPPTSNVPPAGGPFQRFPMPQFSSTAQAPPQHPPPMGQPPIQPSAGQTPSFVPMGSPPSSATPALSGLNVPPPAFQPSFPGYAQKQNGGVQMQAPPVHSSPLSNQGNYGPAPPAASSPFQPHQGGYVPQPPGAGPLGIQHMSSQASGPPIGGVQGLSEDFSSLSIQTRPGLMEPSVDAKELPRPLDGDVEPKSLAEMYPMNCHPRYIRLTTSAIPSSQSLSSRWHLPLGAVVCPLAEPPDWEEVDVVNFAATGVVRCRRCRTYVNPYVTFTEAGRKFRCNMCALVNEVPSEYYAQLDATGRRVDLNQRPELTKGTVEFVAPAEYMVRPPMPPIYFFLIDVSISAVRSGMIEVVAQTIRSCLDKLSGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFVPLPDDLLVNLSESRSVVETFLDSLPTMFQDNVNLESAFGPSLKAAFMVMSQLGGKLLIFQNTLPSLGVGRLKLRGDDSRVYGTDKEHLLRLPEDPFYKQMAAEFCKYQISVNVYAFSDKYSDIASLGTLAKYTAGQVYYYPAFQSVIHGDKLRSELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTMYFQVALLYTASCGERRIRVHTAAAPVVTDLVEMYRLADTGAIISLFSRLAIENTLSRKLEEGRSAVQLRIVKGLREYRNLYAVQHRLANKIIYPESLKFLPLYGLALCRSTPLRGGYGDVALDERCAAGHTMMTLPIKRLLKLLYPNLIRLDGHLLKACADEMKSIDRRLPLTGESLDSRGLYIYDDGFRFIIWFGRVISPDIAKNLLGTDFAAELSKVTLKEHNDEMSRRLVKVLEKFRNTDRAYYQLCHLVRQGEQPREGFLLLSNLVEDQMGSYSGYADWMLQISRQVQQS. 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06524 1003 Gene3D Sec23/Sec24 helical domain 736 1000 - -
Seca8g06524 1003 Gene3D - 283 735 - -
Seca8g06524 1003 SUPERFAMILY Zn-finger domain of Sec23/24 330 409 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Seca8g06524 1003 PANTHER SEC24-RELATED PROTEIN 112 1000 - -
Seca8g06524 1003 MobiDBLite consensus disorder prediction 108 123 - -
Seca8g06524 1003 SUPERFAMILY vWA-like 410 649 IPR036465 -
Seca8g06524 1003 MobiDBLite consensus disorder prediction 124 147 - -
Seca8g06524 1003 MobiDBLite consensus disorder prediction 1 238 - -
Seca8g06524 1003 MobiDBLite consensus disorder prediction 38 52 - -
Seca8g06524 1003 MobiDBLite consensus disorder prediction 76 96 - -
Seca8g06524 1003 Pfam Sec23/Sec24 trunk domain 410 646 IPR006896 GO:0006886|GO:0006888|GO:0030127
Seca8g06524 1003 SUPERFAMILY beta-sandwich domain of Sec23/24 172 745 - -
Seca8g06524 1003 MobiDBLite consensus disorder prediction 161 192 - -
Seca8g06524 1003 CDD Sec24-like 410 651 IPR041742 GO:0006886|GO:0006888|GO:0030127
Seca8g06524 1003 Gene3D Severin 855 981 IPR029006 -
Seca8g06524 1003 Gene3D von Willebrand factor, type A domain 412 649 IPR036465 -
Seca8g06524 1003 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 863 1002 IPR036180 -
Seca8g06524 1003 FunFam protein transport protein Sec24D isoform X1 412 649 - -
Seca8g06524 1003 Pfam Sec23/Sec24 helical domain 747 850 IPR006900 GO:0006886|GO:0006888|GO:0030127
Seca8g06524 1003 Pfam Sec23/Sec24 beta-sandwich domain 652 735 IPR012990 -
Seca8g06524 1003 SUPERFAMILY Helical domain of Sec23/24 747 854 IPR036175 GO:0006886|GO:0006888|GO:0030127
Seca8g06524 1003 Pfam Sec23/Sec24 zinc finger 336 373 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Seca8g06524 1003 Gene3D - 282 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06524 Seca-Chr8 159711086 159721262 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06524 K14007 - gmx:100791083 1593.94