Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06043 ATGGCATCAACATGTGTGGGTTCTTTATCACCCAACCAATCTCTACTTTTTTCACAAACCAAACACTCACCAAGTGCTGCTGCTAACTGGGTAGCTTTTCCTTCAACAAGGAGGAGAGTAGTAAGAGCAGAGAGTATGACTACTGTCACAGAGAAATTGGGCATCAAGATTGAGAAGAATCCTCCTGAGTCCAAGCTCACTCAACTTGGTGTCAGGCAGTGGCCCAAATGGGGTTGCCCTCCAAGCAAATTCCCATGGACATATGATGCAACAGAGACTTGTTATCTTTTGAAAGGAGAAGTGAAGGTTACTCCCAGTGGGGCGAATGAGTCAGTTGAAATTGCTGCTGGTGACTTGGTTGTGTTTCCTAAAGGGATGAGCTGCACTTGGGATGTGTCTGTTGGTTCCACCTTCAAATTATTTTGTAAGACACAACATCAACAAGTAAGAGAAACTAAGAGGAGGAAGAAGGAAAAGATGGCAAGCTCAGCAGATGCATTAGTCATATCATTCGGTGAAATGCTAATTGACTTTGTTCCTGACACATCTGGTGTCTCTTTGGCTGAGTCTCATGCTTTCATCAAAGCCCCTGGAGGTGCCCCTGCCAATGTGGCTTGTGCCATATCCAAACTTGGTGGTAACGCTGCCTTCATTGGCAAGGTGGGAGATGATGAATTTGGAAGGATGCTAGCTGACATCTTGAAGAAAAATGGGGTCAATATAGATGGTGTTTGTTTTGATGTGGAGGCTAGAACTGCATTGGCTTTTGTGACATTGAGGAAGGATGGAGAGAGGGAGTTCATGTTTTATAGAAATCCCAGTGCTGATATGTTGCTGAAGGAATCTGAATTGAATATGGGTTTGATTAAGCAGTCCAAGATATTCCATTATGGATCTATTAGCCTTATATCTGAGCCATGCAGATCAGCTCACTTAGCAGCCATGAAAGCTGCTAAAGAAGGTGGTGCATTGCTGTCCTATGATCCAAATGTGAGGCTGCCTTTGTGGCCTTCTCATGATGCTGCAAGGTCTGTGATCAAGAGCATTTGGTTTGATGCTGACTTCATCAAGGTGAGTGATGATGAAGTTCAATTTCTTACACAAGGAGATCCTGAGAATGAAGAAGTTTGTATGTCCCTGTGGCATGACAATTTGAAGATGCTTCTTGTCACTGATGGAGAGAAGGGTTGCAGATATTTCACCAAGAACTTTAAAGGAAGGGTAACTGGGTTCTCAGTGAAGGCAATTGACACAACTGGTGCTGGTGATTCTTTTGTTGGTGCACTTCTCACAGCTGTGGCAAGGGACACTTCCATATTTGATAACGAACCAAAATTGAGAGAGGCTCTGACGTTTGCAAATGCTTGTGGAGCAATGTGTACAATACAGAAGGGAGCAATTCCTGCACTTCCAACGGCGGCAGAGGCTCAGAAATTTATTGCCAGCTCAAAAGCCAAATAA 1461 0.4394 MASTCVGSLSPNQSLLFSQTKHSPSAAANWVAFPSTRRRVVRAESMTTVTEKLGIKIEKNPPESKLTQLGVRQWPKWGCPPSKFPWTYDATETCYLLKGEVKVTPSGANESVEIAAGDLVVFPKGMSCTWDVSVGSTFKLFCKTQHQQVRETKRRKKEKMASSADALVISFGEMLIDFVPDTSGVSLAESHAFIKAPGGAPANVACAISKLGGNAAFIGKVGDDEFGRMLADILKKNGVNIDGVCFDVEARTALAFVTLRKDGEREFMFYRNPSADMLLKESELNMGLIKQSKIFHYGSISLISEPCRSAHLAAMKAAKEGGALLSYDPNVRLPLWPSHDAARSVIKSIWFDADFIKVSDDEVQFLTQGDPENEEVCMSLWHDNLKMLLVTDGEKGCRYFTKNFKGRVTGFSVKAIDTTGAGDSFVGALLTAVARDTSIFDNEPKLREALTFANACGAMCTIQKGAIPALPTAAEAQKFIASSKAK. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06043 486 Gene3D - 164 486 IPR029056 -
Seca8g06043 486 CDD cupin_TM1112-like 74 132 - -
Seca8g06043 486 PANTHER HEXOKINASE FAMILY MEMBER 167 479 - -
Seca8g06043 486 Gene3D Jelly Rolls 42 141 IPR014710 -
Seca8g06043 486 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 198 222 IPR002173 GO:0016301
Seca8g06043 486 Pfam pfkB family carbohydrate kinase 167 472 IPR011611 -
Seca8g06043 486 SUPERFAMILY Ribokinase-like 168 480 IPR029056 -
Seca8g06043 486 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 417 430 IPR002173 GO:0016301
Seca8g06043 486 CDD bac_FRK 167 467 - -
Seca8g06043 486 FunFam Probable fructokinase-2 165 484 - -
Seca8g06043 486 SUPERFAMILY RmlC-like cupins 66 135 IPR011051 -
Seca8g06043 486 Pfam EutQ-like cupin domain 67 135 IPR008579 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06043 Seca-Chr8 154054817 154059688 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06043 K00847 - gmx:100775586 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06043 8 154054817 154059688 Seca8g06043 8 154054817 154059688 ECH