Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06042 ATGTTCAACTTTATCAAAAGATTATGCCTTCTATGTTTCCTCTTGCAATCCTTTGATGTTTCTGTGTGTTTATCTGCTTCTCTCAGAGACTTCACTTCTTGTTTGGATAATCACAAAATAAAAAACTTTACCACATTCCCTTACAAAGAACATGATCACTCCTCTACTTATAATTACTTCAAAATTCTCAAATTTTCAATTCAGAACCTTCGGTTTGCAGAACCTTTGATTCCTAAGCCAATAGCCATTGTACTGCCAGAGAGTTTGGAGCAGCTACAGAATAGTATAGCATGCTGTAGGGAAGGCTCCTTGGAAATCAGAGTAAGATGTGGTGGACATAGCTATGAAGGAACTTCCTCTGTTGCTGATGATGGCACTCTTTTTGTCATTATTGACATGATGAATTTAAACCATGTTTGGGTTGATATGGAGACTGAGACAGCATGGGTTGAAGGTGGTGCAACCTTGGGAGAGACTTACTATGCAATCTCTCAGGCAAGTGATGTACATGGATTCTCAGCTGGGTCTTGTCCAACTGTAGGAGTTGGGGGGCATATTGGTGGTGGTGGATTTGGGTTGTTGTCTAGAAAATATGGACTTGCAGCAGACAACGTGGTGGATGCACTTCTTGTTGATGCCAATGGACAATTGTTAAACCGTGAAACCATGGGAGAAGATGTGTTTTGGGCCATTAGAGGAGGAGGGGGTGGTCTTTGGGGGATTGTTTATGCCTGGAAAATCCAGGTGTTGAAAGTGCCCCAAATTGTAACTGGTTTCATTGTATCTAGAACAGGCACAAAAAGACATGTTGCCAAGCTAGTGCACAAATGGCAATATGTGGCACCCAACTTGGAAGATGACTTTTACTTGTCATGCTTTGTGGGTGCTGGTTTGCCTGAAGCTAAAACTATTGGCTTATCAGCAACATTTAAAGGGCTTTATCTTGGTCCTAGGGCCAGTGCAATATCTATCCTAAACAAGGCTTTTCCTGAATTGGGCATTGAAGAAGAAGAATGTAGAGAAATGAGTTGGATTGAGTCAATTGTTTTCTTCTCTGGCTTAAGTGATGGAGCCTCAATCTCTGACTTGAAGAATAGGTATTTTCAAGATAAAGAATATTTCAAGGCCAAATCAGATTTTGTAAAGAACAATGTTTCTCTTTTGGGCATAGAAACTGCACTAGACATCCTTGAAAAGGAGCCTAAAGGGTATGTCATTCTAGACCCTTATGGTGGGATGATGCATAATATAAGCAGTGAATCCATTGCTTTTCCCCACAGATCAGGAAACCTGTTTACAATTCAGTATCTGGTCTATTGGAAAGAAACTGACAATGATAAAAGCAGTGATTATATTGATTGGATAAGAGGGTTCTATGCTTCTATGACTCCCTTTGTTTCATGGGGTCCAAGGGCTGCATATATTAATTACATGGACTTTGACCTTGGAGTAATGGAGCAGATTAGAAATGGTGCTAATATGAAAGATGCTGTGGATAATGCAAGGGTTTGGGGTGAAAAGTACTTCTTGAGTAACTATGACAGACTAGTGAGGGCTAAGACTCTGATTGATCCAAACAATGTTTTCACCAATGAACAAGGCATTCCTCCAATGTCATTTGCCAGCCCCAATGCGAAAGCACTAAGTACATCATAA 1656 0.404 MFNFIKRLCLLCFLLQSFDVSVCLSASLRDFTSCLDNHKIKNFTTFPYKEHDHSSTYNYFKILKFSIQNLRFAEPLIPKPIAIVLPESLEQLQNSIACCREGSLEIRVRCGGHSYEGTSSVADDGTLFVIIDMMNLNHVWVDMETETAWVEGGATLGETYYAISQASDVHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLVDANGQLLNRETMGEDVFWAIRGGGGGLWGIVYAWKIQVLKVPQIVTGFIVSRTGTKRHVAKLVHKWQYVAPNLEDDFYLSCFVGAGLPEAKTIGLSATFKGLYLGPRASAISILNKAFPELGIEEEECREMSWIESIVFFSGLSDGASISDLKNRYFQDKEYFKAKSDFVKNNVSLLGIETALDILEKEPKGYVILDPYGGMMHNISSESIAFPHRSGNLFTIQYLVYWKETDNDKSSDYIDWIRGFYASMTPFVSWGPRAAYINYMDFDLGVMEQIRNGANMKDAVDNARVWGEKYFLSNYDRLVRAKTLIDPNNVFTNEQGIPPMSFASPNAKALSTS. 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06042 551 PANTHER OS08G0158400 PROTEIN 26 538 - -
Seca8g06042 551 Pfam FAD binding domain 80 218 IPR006094 GO:0050660
Seca8g06042 551 Gene3D - 141 537 IPR016169 -
Seca8g06042 551 Pfam Berberine and berberine like 473 536 IPR012951 GO:0016491|GO:0050660
Seca8g06042 551 Gene3D - 255 469 - -
Seca8g06042 551 ProSiteProfiles PCMH-type FAD-binding domain profile. 76 252 IPR016166 GO:0071949
Seca8g06042 551 Gene3D - 30 136 IPR016167 -
Seca8g06042 551 SUPERFAMILY FAD-binding/transporter-associated domain-like 72 253 IPR036318 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06042 Seca-Chr8 154036481 154038136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06042 29 536 Miscellaneous Gene Families AT1G30760 41.634 3.40e-129 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06042 - - gmx:100790761 969.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06042 8 154036481 154038136 Seca8g06042 8 154036481 154038136 ECH