Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05841 ATGGGTAAGATTCTGCGAGAAACATCGAGGCCGTCCTCTAATTGTTCCTCGGCATCTCCTTCATCGGCGCCGGCGACTACCTCGTCGACGTCGATCACGGACACAGTGATGGGTTCGCATCAGTTGAAGATCACGGGCTATTCGTTGTCGAAAGGGATTGGAATTGGAAAGTACATAGCTTCGGATATATTCTCGGTGGGTGGGTACGATTGGGCGATCTATTTTTACCCGGATGGGAAGAGCCTGGAGGACAATGCCTCCTCTGTGTCGCTCTTCATCGCCCTTGCAAGCGAAGGGACAGATGTTAGGGCTCTTTTTGAGTTGACCCTTTTGGATCAGAGTGGGAAGGAGAGACACAAGGTGCATAGCCATTTTGAGAGGACCCTTGAGAGTGGACCATACACGTTAAAATACCGTGGTAGTATGTGGGGTTACAAGCGGTTTTTTAAGAGATCAACACTAGAAACATCAGACTACCTTAAAGATGATTGCCTTACTGTTACTTGTAAAGTTGGTGTTGTAAAGTCACACACTGAGGGCCCTAAAATATATTCAATCCCAATACCACCTTCTAATATTGGTCAGCAATTTGGGATGCTACTGGAAAGTGGAAAAGGCAGTGATGTGAGTTTTGAAGTGGATGGTGAAATTTTTGCTGCTCATAAGTTGGTACTAGCAGCTCGCTCACCTGTTTTCAGAGCCCAACTTTTTGGTCCTATGAAAGATCAGAATACTCAGTGTATAAAAGTTGAAGACATGGAAGCTCCAGTTTTCAAGGCGTTGCTTCATGTTATATATTGGGATTCACTACCTGACATGCAAGAGCTTACTGGGTTGAACTCGAAATGGGCGACTACCTTGATGGCTCAGCATCTGCTAGCAGCAGCTGATCGGTATGGCTTAGATAGGCTTAGGTTGATTTGTGAAGCAAGTCTCTGTGAAGATGTTGCAATAAATACTGTGGCTACGACTTTAGCTTTGGCAGAGCAGCACCATTGTTTCCAACTGAAAGCAGTCTGTCTGAAATTCATTGCAAGACCTGAAAATCTCAGAGGTGTGTTTTCGTTATTTGAACTTTTATTTTGTCATGCACAGGCAGCAAAAGATAGAATGGGGGCAACAAAGATTGAACTCTAG 1137 0.4477 MGKILRETSRPSSNCSSASPSSAPATTSSTSITDTVMGSHQLKITGYSLSKGIGIGKYIASDIFSVGGYDWAIYFYPDGKSLEDNASSVSLFIALASEGTDVRALFELTLLDQSGKERHKVHSHFERTLESGPYTLKYRGSMWGYKRFFKRSTLETSDYLKDDCLTVTCKVGVVKSHTEGPKIYSIPIPPSNIGQQFGMLLESGKGSDVSFEVDGEIFAAHKLVLAARSPVFRAQLFGPMKDQNTQCIKVEDMEAPVFKALLHVIYWDSLPDMQELTGLNSKWATTLMAQHLLAAADRYGLDRLRLICEASLCEDVAINTVATTLALAEQHHCFQLKAVCLKFIARPENLRGVFSLFELLFCHAQAAKDRMGATKIEL. 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05841 378 Pfam MATH domain 56 171 IPR002083 GO:0005515
Seca8g05841 378 Pfam BTB/POZ domain 199 314 IPR000210 GO:0005515
Seca8g05841 378 ProSiteProfiles BTB domain profile. 207 266 IPR000210 GO:0005515
Seca8g05841 378 SMART math_3 42 154 IPR002083 GO:0005515
Seca8g05841 378 SUPERFAMILY TRAF domain-like 35 173 - -
Seca8g05841 378 Gene3D Potassium Channel Kv1.1; Chain A 176 346 IPR011333 -
Seca8g05841 378 SMART BTB_4 207 316 IPR000210 GO:0005515
Seca8g05841 378 MobiDBLite consensus disorder prediction 7 31 - -
Seca8g05841 378 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 36 175 IPR008974 GO:0005515
Seca8g05841 378 ProSiteProfiles MATH/TRAF domain profile. 37 171 IPR002083 GO:0005515
Seca8g05841 378 CDD MATH 38 171 IPR002083 GO:0005515
Seca8g05841 378 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 27 345 IPR045005 GO:0016567
Seca8g05841 378 MobiDBLite consensus disorder prediction 1 31 - -
Seca8g05841 378 CDD BTB_POZ_BPM_plant 193 313 - -
Seca8g05841 378 SUPERFAMILY POZ domain 184 314 IPR011333 -
Seca8g05841 378 FunFam BTB-POZ and math domain 1 183 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05841 Seca-Chr8 151048497 151054451 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05841 K10523 - gmx:100799666 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05841 8 151048497 151054451 Seca8g05841 8 151048497 151054451 ECH
Seca8g05841 8 151048497 151054451 Seca2g04194 2 126215804 126220869 PCT