Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05840 ATGTTGTTCTTCTCATACTTCAAGGATTTGGTTGGGAGAGAAGTAACGGTTGAGCTGAAGAACGATTTGGCCATCAGAGGCACATTGCACTCTGTGGACCAGTACCTCAACATCAAGCTCGAGAACACTCGCGTTGTCGATCAAGACAAGTTCCCCCACATGCTTTCTGTAAGGAACTGCTTCATCAGAGGGTCGGTGGTGAGATATGTGCAACTACCACCAGAAGGGGTGGACATTGAGCTACTGCATGATGCCACCAGGAGAGAAGCTCGGGGTGGTTAA 282 0.4929 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKFPHMLSVRNCFIRGSVVRYVQLPPEGVDIELLHDATRREARGG. 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05840 93 PIRSF Lsm2 1 93 IPR016654 GO:0006397
Seca8g05840 93 FunFam U6 snRNA-associated Sm-like protein LSm2 1 93 - -
Seca8g05840 93 SUPERFAMILY Sm-like ribonucleoproteins 3 92 IPR010920 -
Seca8g05840 93 Pfam LSM domain 7 71 IPR001163 -
Seca8g05840 93 ProSiteProfiles Sm domain profile. 2 76 IPR047575 GO:0003723
Seca8g05840 93 CDD LSm2 2 90 IPR016654 GO:0006397
Seca8g05840 93 Gene3D - 1 92 - -
Seca8g05840 93 PANTHER SNRNP CORE PROTEIN FAMILY MEMBER 1 91 IPR016654 GO:0006397
Seca8g05840 93 SMART Sm3 5 72 IPR001163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05840 Seca-Chr8 151044485 151046671 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05840 K12621 - ini:109182823 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05840 8 151044485 151046671 Seca8g05840 8 151044485 151046671 ECH