Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05804 ATGAAGTTGAACAACGAAACCGTATCAATCGAGCTTAAGAATGGTACCATTGTTCATGGTACTATTACAGGTGTTGATATCAGTATGAATACACATCTGAAAACGGTTAAACTAACCTTGAAAGGGAAAAACCCAGTAACTTTGGATCATCTCAGTGTGAGAGGTAACAACATTCGTTATTATATCCTTCCTGACAGCTTGAATCTTGAGACTTTGCTGGTTGAAGAGACACCTAGGGTCAAGCCTAAGAAGCCAACTGCTGGTAGGAAGCCTTTGGGGCGTGGACGTGGCCGGGGGCGGGGGCGGGGTCGTAGTCGTGGCCGCTGA 327 0.4648 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRKPLGRGRGRGRGRGRSRGR. 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05804 108 ProSiteProfiles Sm domain profile. 1 67 IPR047575 GO:0003723
Seca8g05804 108 MobiDBLite consensus disorder prediction 84 108 - -
Seca8g05804 108 SMART Sm3 1 63 IPR001163 -
Seca8g05804 108 Pfam LSM domain 2 62 IPR001163 -
Seca8g05804 108 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 106 IPR027141 GO:0006396
Seca8g05804 108 SUPERFAMILY Sm-like ribonucleoproteins 2 105 IPR010920 -
Seca8g05804 108 CDD Sm_D1 1 86 IPR034102 GO:0000387
Seca8g05804 108 Gene3D - 1 78 - -
Seca8g05804 108 MobiDBLite consensus disorder prediction 75 108 - -
Seca8g05804 108 FunFam Small nuclear ribonucleoprotein Sm D1 1 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05804 Seca-Chr8 150716425 150718580 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05804 K11087 - pvy:116116412 179.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05804 8 150716425 150718580 Seca8g05804 8 150716425 150718580 ECH