Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05778 ATGGCTACGAACAGTTTCCTCCTCCAATGTCCGTCGTCGACGGCCAAGCGACCCTGTCCTTCGCAAAACCCTAGAACGGAGAACCTCAACGAGGTGGAGCATCTCCTCGATGCATTCCTTGGCCTCTCTGATTCCCCTTCTCTGTCTCTCGATCATTCCCTCGAGATGCTTCTCGAATCTATGCCCTCTGATTCCGATCAGACGACCGTCATCGATCGCGCCCTTAAAATGGGATCCATGCTTCTCGATGCCGCCAAACACTCCTCACGGAAACGAGCTTCCAAGCATAATTCCCTCGCTTGGCCTCTCCCTCCCGACCTTACCATCAAGGTCTTCTCAATGCTTGATACCCAGAGCCTATGCTATGCATCGGCTACCTGTTCATTGTTTAACAAATGTGCTAAAGATCCTTTGTGTTATGCAAATCTTGATTTGACAACACTTGTTCCAAAGATTAACAATTCAGTAGTGTCCACAATGATTCAGCGAGCTGGAAAGGCACTAAGGTCTCTTAAGCTTGGTGTGATCCCTGGTGCTACTGCTTCGCTTGGATCTTGCCAACCATTGGTTTGTACCATCAGAAATGCCATTGTAGAGGTATCTAACTTCTCATGGAATGACAAGAGATCTCGACAAGGGAGAGAATCTTCCATTCTTACAAGATCCTGTTTAAGCCCTCTAAGCAGGGATGGGGGTGCTCCAGGGGCTCTTTTGAGAAAGTTGAAATTGTACAATATTGAAAGGATAGATAATGCATCACTTAGTGGGGCATTATCAGCATGCCCTTCTCTTCTTGATCTGGAAATTGTTGGGCTTCACGTTGAATTGAGGCAAACATTAATGTCAGTAAGTGCGAACTGCCACTTGATTGAGCGTTTGTTTTTTGAGTCTTCTAAAACAGGTAGAGATGACAGTTTGAAAACACAAACCTGTGTTGAACTAGTGGAGAATTGTCCCCAACTAACTTCTTTATCTCTTAGAGGGTTTAAACTACATGATTATAAAGTTCGTGTACTGGTTAAGGGATTTCGGAAACTGAAATATGTTGATTTTTCTACATCCTACTCAATCACCGGAAGCTTCTTAAGAAACCTTGGAAGCTGCAATGGTGGGAATTTGCTTGAGGTCTTAATTTTAAGGGATTGCATGCATCTGAAAGAGATGGAAGTTGCTAGGTTGTTGACAGCAATTCTTGCAGGCGACTTCAAATTGCTTGTACATCTTGATATATCCAATAGGGAAGGCTTAGCATCTGAGGGTGATTGGTATCACAGGTGCTACAACTCTAGTATCATGCCTGTAAAGCAGGTTTTGGAAGCAAGGCCTGATATGTGTTTGGTGGCTGAATATCCATCAGAAGGAAGTTACATTGAGTCATTTGACACTGATATGAACAGTGAAATAAGTCTGCCATCACAATTGAGCTTTCATAGTTCAGATGGATTGATTTTTTTAAGTACATCTGAAAGCAGCTACAATAGTGACCAGGGTAGTGGTAACGAGGATGGTCAAGATGCCAGCTATGTGATTTATGAGGAAAGTTCAGATGAGATAAACTTCTTGTCACTGTAG 1572 0.4338 MATNSFLLQCPSSTAKRPCPSQNPRTENLNEVEHLLDAFLGLSDSPSLSLDHSLEMLLESMPSDSDQTTVIDRALKMGSMLLDAAKHSSRKRASKHNSLAWPLPPDLTIKVFSMLDTQSLCYASATCSLFNKCAKDPLCYANLDLTTLVPKINNSVVSTMIQRAGKALRSLKLGVIPGATASLGSCQPLVCTIRNAIVEVSNFSWNDKRSRQGRESSILTRSCLSPLSRDGGAPGALLRKLKLYNIERIDNASLSGALSACPSLLDLEIVGLHVELRQTLMSVSANCHLIERLFFESSKTGRDDSLKTQTCVELVENCPQLTSLSLRGFKLHDYKVRVLVKGFRKLKYVDFSTSYSITGSFLRNLGSCNGGNLLEVLILRDCMHLKEMEVARLLTAILAGDFKLLVHLDISNREGLASEGDWYHRCYNSSIMPVKQVLEARPDMCLVAEYPSEGSYIESFDTDMNSEISLPSQLSFHSSDGLIFLSTSESSYNSDQGSGNEDGQDASYVIYEESSDEINFLSL. 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05778 523 Gene3D Ribonuclease Inhibitor 97 399 IPR032675 -
Seca8g05778 523 Pfam F-box-like 103 145 IPR001810 GO:0005515
Seca8g05778 523 FunFam F-box protein isoform A 96 397 - -
Seca8g05778 523 SUPERFAMILY F-box domain 101 147 IPR036047 GO:0005515
Seca8g05778 523 SUPERFAMILY RNI-like 235 413 - -
Seca8g05778 523 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 102 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05778 Seca-Chr8 150072262 150077263 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05778 K10268 - gmx:100786317 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05778 8 150072262 150077263 Seca8g05778 8 150072262 150077263 ECH