Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05761 ATGGCATTTAGAGGGTTTGTCATGTGTCTAGTTTTGGTCCTTGTGGCCATTATGTGGACTCAAAGTGCAGCACAATCAGGTTGCACCAGTACACTCACTAGCTTGAGCCCTTGCCTGAACTACATTATGGGAAGTTCATCAACCCCATCAGCTTCATGTTGCTCACAGCTCTCAAGTGTAGTCCAATCTTCACCACAGTGCCTCTGCTCTGTTCTTAATGGTGGGGGTTCCTCTTTTGGAATCACCATAAATCAAACTCTTGCTCTGTCTCTCCCTGGCGCTTGTAAAGTGCAAACTCCACCTGTTAGCCAGTGCAAAGCTGGCAATGGACCAACATCTCCTTCAACTGCTCCAGTGGGCTCACCAGTTGGTTCTCCATCTGATTCTTCAACTGAATCACCTGAAGGCTCAATTACACCTTCTGCTTCAGAGTTTCCCTCAGCAGGTGCAGGATCTAAAACTGTCCCATCAACAGACGGTGGCTCATCTGATGGAAGCACTATTAAAGTCCCCTTCTTCCACTTGATGCTCTATCTTCTTGCTATTGTGTCTTGCGTCACCAAGTTCTGA 570 0.4719 MAFRGFVMCLVLVLVAIMWTQSAAQSGCTSTLTSLSPCLNYIMGSSSTPSASCCSQLSSVVQSSPQCLCSVLNGGGSSFGITINQTLALSLPGACKVQTPPVSQCKAGNGPTSPSTAPVGSPVGSPSDSSTESPEGSITPSASEFPSAGAGSKTVPSTDGGSSDGSTIKVPFFHLMLYLLAIVSCVTKF. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05761 189 MobiDBLite consensus disorder prediction 105 163 - -
Seca8g05761 189 FunFam Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 25 104 - -
Seca8g05761 189 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Seca8g05761 189 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Seca8g05761 189 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
Seca8g05761 189 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 106 IPR036312 -
Seca8g05761 189 Gene3D - 25 105 IPR036312 -
Seca8g05761 189 Pfam Probable lipid transfer 14 105 IPR016140 -
Seca8g05761 189 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 10 164 IPR043325 -
Seca8g05761 189 SMART aai_6 28 105 IPR016140 -
Seca8g05761 189 CDD AAI_LTSS 35 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05761 Seca-Chr8 149964808 149966047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05761 1 189 Acyl Lipid Metabolism Gene Families AT2G48130 44.103 1.36e-44 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05761 - - gmx:100306151 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05761 8 149964808 149966047 Seca8g05761 8 149964808 149966047 ECH
Seca8g05761 8 149964808 149966047 Seca8g05761 8 149964808 149966047 PCT