Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05546 ATGGCTGCAGATTCCAATTCAAATCTTAGAATCATCATTGAAAGCAATCCTCCTGAGTCACGCCTAGCTGAATTGAACATCAAGTGCTGGCCCAAATGGGGTTGTTCTCCAGGGAAGTACCAATTAAAGTTTGATGCAGAGGAGACATGCTATTTGTTGAAAGGGAAGGTGAAGTCATACCCAAAAGGGTCATCAGAGTTTGTAGAGTTTGGTGCTGGGGACCTTGTGACTATCCCAAAAGGACTCAGTTGCACTTGGGATGTGTCTGTTGCTGTGGATAAGTACTACAAATTTGAGTCAGCTTCTTCTTCTTCTTAG 318 0.434 MAADSNSNLRIIIESNPPESRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKSYPKGSSEFVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESASSSS. 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05546 105 Gene3D Jelly Rolls 2 98 IPR014710 -
Seca8g05546 105 SUPERFAMILY RmlC-like cupins 27 96 IPR011051 -
Seca8g05546 105 Pfam EutQ-like cupin domain 23 96 IPR008579 -
Seca8g05546 105 PANTHER OS04G0445200 PROTEIN 6 99 - -
Seca8g05546 105 CDD cupin_TM1112-like 30 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05546 Seca-Chr8 146908255 146909480 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05546 - - gmx:100793722 207.608
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05546 8 146908255 146909480 Seca8g05546 8 146908255 146909480 ECH
Seca8g05546 8 146908255 146909480 Seca2g04456 2 129978495 129979363 PCT