Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05545 ATGGCGGTCATTGAAAATTTTGGTAGAAATGTCTTTAGTTTGCTAGCACAAAGAGAGATTTCGCCTAGAACCAAACATGTGCCAAAATGGCACTGGGGAGAATCTTCTAAATCAAACTCTGGTTCTTGCTCCCATCCTAAAAGTGAAGCAGTGATAGATGCGAAACGTGGTCTCGTCTCATGGGTTGAGGCTGAGTCATTGCGGCATTTGTCAGCTAAGTATTGCCCTTTATTTCCTCCCCCACGATCAACTATTGCAGCAGCGTTTAGTCCAGATGGAAAAGTGCTTGCCTCCACACATGGTGACCACACGGTAAAGATAATTGATTGTGAAACTGGAAATTGCTTAAAGGTGTTAGTTGGCCACAGAAGGACGCCTTGGGTGGTTAGGTTCCATCCATTGCATCGACGAATACTTGCTAGCGGGAGCTTGGACCAAGAAGTTCGTTTATGGGATGCTAACACATCAGAGTGGATATTATCTCACTATTTCTATCGTCCCATTGCATCCATTGCTTTCCATGCCAATGGGGAAATAATTGCTGTTGCATCAGGCCACAAGTTATACATGTGGCACTACAGCAATGGAGGTGAAGCGTCCTCACCAGTATTTGTGTTGAAGACAAGGCGCTCACTCCGGGCTGTGCATTTTCACCCGCATGCTGCACCATATCTTTTAACTGCTCAGGTCAATGATCTTGACTCTTCAGATTCCTCAATGACAGAGGCAACATCTCTTGGTTATTTACAATATCCTCCACCTACTGTTTTTATCACAAATGTTCATCCTGGGACACACATCAATTTGTCAAGTGAACTACAGCATGTGTCATTGCCTCTCTTCTTCATGCCTTCATATACTGTAGATGAGTCAAGAGTAGAACTACAGCATGCTAATCATGATGTTGGTTCAGGTAGCATGCAGGTTGAGTCTTCTGCTTTAGTTCAGTTTCGAACTGACACAAATGCAACAGAACAATATGATACTGCATTGTCATTCTCTGAGATTCCCACTAGTTCTCAAACTGGTGCAGAATATAATGCCCATACTACTTTACCTAATCAAATGAGAATTGGCATCAGTAACCTCACGATGGGTGGTATGGAGACACATGAAACAGAAACAGAACCAGCTGAAGTAAGCCAACATGAAAACTCTGCCAATGTCTATTCTCTTGAGGGAGTGCTACATGGACTATCTAGTCATACTGCAAAACATGAGGATCTCTCAGTGTTTGGTCAACTTCATCAGTTTCTTCCTTCAAGAGATCCAAGAGGATGGGAGTTACCTTTTTTGCAAGGATGGTTAATGGGTCAAATCCAAGTTGGTGTTCCCTCAATGCCTCCTCAAATTGGCGGTAGTCGTGACAGCCTTCCTCAACAGATTGGTTCTTCCACCATGGCATCTAATCTGGCCACTACTAATGTTGAGGTAGCGACACCATCTCCAGAAATGACTAGCAGCATCAGCATACCGGAAGCTTCACAATCAGGTTTACGGAATCATTTTTCACAATCCCGTTTACCTGTACCTGATTCTGGCAATCATGCTGCTTCTATTAATTCCCAACGTGATGGGTCTGATAACCAAACCATTATAAGTCGAATCCAGTCAGAACTTGCCACATCAGTGGCTGCTGCAGAGTTGCCTTGCACTGTTAAGTTAAAAGTATGGTCATATGACTTAAAAAATCCTTGTGCCCCACTAAGTAGACGTCGTCTAACTATACCACATGTCGTCCTCTGCAGTGAAATGGGTGCCCATTTTTCACCATGTGGTAGATTTTTAGCCGCCTGTGTTGCATGTTTGCATCCTCATATAGAAGCTGATCCAGGATTACAAACTCTTGTACACCAGGAGCCTGGAGTTGCAACATCGCCAACTCGACATCCAATCTCAGCACATCAAGTAATGTACGAGCTCCGGATATATTCTCTTGAGGAGGCAACGTAG 1953 0.4383 MAVIENFGRNVFSLLAQREISPRTKHVPKWHWGESSKSNSGSCSHPKSEAVIDAKRGLVSWVEAESLRHLSAKYCPLFPPPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGNCLKVLVGHRRTPWVVRFHPLHRRILASGSLDQEVRLWDANTSEWILSHYFYRPIASIAFHANGEIIAVASGHKLYMWHYSNGGEASSPVFVLKTRRSLRAVHFHPHAAPYLLTAQVNDLDSSDSSMTEATSLGYLQYPPPTVFITNVHPGTHINLSSELQHVSLPLFFMPSYTVDESRVELQHANHDVGSGSMQVESSALVQFRTDTNATEQYDTALSFSEIPTSSQTGAEYNAHTTLPNQMRIGISNLTMGGMETHETETEPAEVSQHENSANVYSLEGVLHGLSSHTAKHEDLSVFGQLHQFLPSRDPRGWELPFLQGWLMGQIQVGVPSMPPQIGGSRDSLPQQIGSSTMASNLATTNVEVATPSPEMTSSISIPEASQSGLRNHFSQSRLPVPDSGNHAASINSQRDGSDNQTIISRIQSELATSVAAAELPCTVKLKVWSYDLKNPCAPLSRRRLTIPHVVLCSEMGAHFSPCGRFLAACVACLHPHIEADPGLQTLVHQEPGVATSPTRHPISAHQVMYELRIYSLEEAT. 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05545 650 SMART WD40_4 155 192 IPR001680 GO:0005515
Seca8g05545 650 SMART WD40_4 112 152 IPR001680 GO:0005515
Seca8g05545 650 SMART WD40_4 71 109 IPR001680 GO:0005515
Seca8g05545 650 FunFam Activating molecule in BECN1-regulated autophagy protein 66 246 - -
Seca8g05545 650 ProSitePatterns Trp-Asp (WD) repeats signature. 139 153 IPR019775 -
Seca8g05545 650 ProSiteProfiles Trp-Asp (WD) repeats profile. 119 161 IPR001680 GO:0005515
Seca8g05545 650 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 10 650 - -
Seca8g05545 650 MobiDBLite consensus disorder prediction 26 47 - -
Seca8g05545 650 Pfam WD domain, G-beta repeat 113 152 IPR001680 GO:0005515
Seca8g05545 650 Pfam WD domain, G-beta repeat 86 109 IPR001680 GO:0005515
Seca8g05545 650 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 119 157 - -
Seca8g05545 650 SUPERFAMILY WD40 repeat-like 86 560 IPR036322 GO:0005515
Seca8g05545 650 MobiDBLite consensus disorder prediction 500 529 - -
Seca8g05545 650 Gene3D - 82 259 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05545 Seca-Chr8 146871781 146880712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05545 86 253 Miscellaneous Gene Families AT5G08390 24.862 3.21e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05545 K17985 - gmx:100817857 991.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05545 8 146871781 146880712 Seca8g05545 8 146871781 146880712 ECH