Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05544 ATGATGGAGAATAATCCTTCTGAGGTGCTTGGCTCAAAAGGTTTGATTAAAAAACATGAATTTGTGAGAATCATAGTTCAATGTCTATATTCATTAGGGTACACTAAGTCTGCATCTTGTTTGGAACTTGAATCTGGGGTTTTGCACAAGTCCAGGGAGCTTCAGTTGCTTGAATCACATGTAATGAATGGAAATTGGGATGTTTGTATTGGTTTTCTTAATTCCATGAAGGATGTGTTGGGTGAAGCTGTAGAGTCTGCTTTGTTTCTTGTCTTCAGACAGTGTCTTATGGAGTATCTGAAGCGTGGTGAGGATACTTTGGCTTTGGATTTGTTGAGGAAAAGGGTCTCTGCATTACACGTGGACCGTTGCGAGGTTCACAGCCTGGCTGGTAGTATGCTTACCTCCAAGGATATGGAGTTTGGTGAGACGGATGGTGACATTGTTCATGATTTGCGAAGGAAGTTGGTAATAGATTTGGAAAAATTGCTTCCTCCACCAATTTCCATACCTGATGGAAGGTTGGAGCATTTAGTTGAAACTGCTGTTGCAGCTTGGGTTGATTCTTGCTTGTATCACAATTCACCAAATTCAATTTCACTTTATGAGGATCATTGTTGTGGCAGGGATCAGTTTCCTACTGCAACCACTCAGATATTAACTGGACATAGAAATGAAGTTTGGTTTGTGCAATTTTCTCATAACGGAGAGCATCTAGCCTCTTCTTCCAATGATTGTACAGCCATCATATGGAAGGTGTTAGAAGATGGGAAATTGACATTGAAACACACACTTTGTGGTCATGAACGGGCTGTATCCTTTGTAGCATGGAGTCCTGATGACACCAAGTTGCTCACATGTGGGAACACAGAAGTTTTGAAGCTGTGGGATGTTGAGACAGGTACATGTAAGCATACATTTGGGAATCAAGGCTTTGTTGTCAGCTCATGTGCCTGGTTTCCCAACTCAACACAGTTTGTTTGTGGCAGTTTTGATCCTGAAAAGGGCATCTGCATGTGGGATTGTGATGGAAATGAGATAAGGTCATGGAGAGGAATGAGGATGCCCAAAGTTGTAGATATTGCTGTTACTCCAGACGGCGAGTATCTTATTAGCATATTCTTGGATAAAGAAATTCGGATTTTGCATATGGGAACCAATGCTGAGCGAGTCATTTCAGAGGAGCATCCAATCACATCAATTTCAGTTTCTGGAGATAGTAAGTACTTCATTGTCAATCTGAACAGCCAGGAGATTCATATGTGGGATGTGGCCGGTAAATGGGATAAGCCATTGAGGTACATGGGCCACAAGCAATGCAAATATGTGATCAGGTCTTGTTTTGGTGGATTGGATAGTGCTTTTATTGCCAGTGGAAGTGAGAATTCACAGGTATACATTTGGAATTCTCGGAACTCCATGCCAATAGAGGTTTTATCTGGGCACTCCCAGACTGTAAATTGTGTGAGCTGGAATCCTAAAAGGCCACAAATGTTGGCATCTGCAAGTGATGATTATACAATTCGTATATGGGGACCCAGCTTACAAAAAAGGACGCAACTTGCATAG 1569 0.4181 MMENNPSEVLGSKGLIKKHEFVRIIVQCLYSLGYTKSASCLELESGVLHKSRELQLLESHVMNGNWDVCIGFLNSMKDVLGEAVESALFLVFRQCLMEYLKRGEDTLALDLLRKRVSALHVDRCEVHSLAGSMLTSKDMEFGETDGDIVHDLRRKLVIDLEKLLPPPISIPDGRLEHLVETAVAAWVDSCLYHNSPNSISLYEDHCCGRDQFPTATTQILTGHRNEVWFVQFSHNGEHLASSSNDCTAIIWKVLEDGKLTLKHTLCGHERAVSFVAWSPDDTKLLTCGNTEVLKLWDVETGTCKHTFGNQGFVVSSCAWFPNSTQFVCGSFDPEKGICMWDCDGNEIRSWRGMRMPKVVDIAVTPDGEYLISIFLDKEIRILHMGTNAERVISEEHPITSISVSGDSKYFIVNLNSQEIHMWDVAGKWDKPLRYMGHKQCKYVIRSCFGGLDSAFIASGSENSQVYIWNSRNSMPIEVLSGHSQTVNCVSWNPKRPQMLASASDDYTIRIWGPSLQKRTQLA. 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05544 522 SUPERFAMILY WD40 repeat-like 211 511 IPR036322 GO:0005515
Seca8g05544 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 479 511 - -
Seca8g05544 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 253 IPR001680 GO:0005515
Seca8g05544 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 479 511 IPR001680 GO:0005515
Seca8g05544 522 SMART Lish 17 49 IPR006594 GO:0005515
Seca8g05544 522 ProSiteProfiles LIS1 homology (LisH) motif profile. 17 49 IPR006594 GO:0005515
Seca8g05544 522 Pfam WD domain, G-beta repeat 301 340 IPR001680 GO:0005515
Seca8g05544 522 Pfam WD domain, G-beta repeat 436 469 IPR001680 GO:0005515
Seca8g05544 522 Pfam WD domain, G-beta repeat 476 511 IPR001680 GO:0005515
Seca8g05544 522 Pfam WD domain, G-beta repeat 261 297 IPR001680 GO:0005515
Seca8g05544 522 Pfam WD domain, G-beta repeat 217 252 IPR001680 GO:0005515
Seca8g05544 522 CDD WD40 217 511 - -
Seca8g05544 522 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 50 107 IPR006595 -
Seca8g05544 522 SMART WD40_4 472 512 IPR001680 GO:0005515
Seca8g05544 522 SMART WD40_4 343 383 IPR001680 GO:0005515
Seca8g05544 522 SMART WD40_4 385 423 IPR001680 GO:0005515
Seca8g05544 522 SMART WD40_4 300 341 IPR001680 GO:0005515
Seca8g05544 522 SMART WD40_4 213 252 IPR001680 GO:0005515
Seca8g05544 522 SMART WD40_4 427 469 IPR001680 GO:0005515
Seca8g05544 522 SMART WD40_4 258 297 IPR001680 GO:0005515
Seca8g05544 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 301 - -
Seca8g05544 522 Gene3D - 209 514 IPR015943 GO:0005515
Seca8g05544 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 306 IPR001680 GO:0005515
Seca8g05544 522 PANTHER WD REPEAT PROTEIN 26-RELATED 3 514 - -
Seca8g05544 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 253 - -
Seca8g05544 522 FunFam WD repeat-containing protein 26 homolog 207 512 - -
Seca8g05544 522 SMART ctlh 50 107 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05544 Seca-Chr8 146865853 146870092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05544 218 371 Miscellaneous Gene Families AT5G08390 29.870 4.42e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05544 K22382 - gmx:100818922 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05544 8 146865853 146870092 Seca8g05544 8 146865853 146870092 ECH