Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05378 ATGGCAGCATCACACTCGCACCTCCTCCATCATTCTCCTTCCCTTTCCAAAACCTTTAATCACTCTTTGAACCAAAACCCTTTCACCCAAAACCTAATTCTACCCCTCAAAGCTACCAATAAACCCCGGATTCTCAGAGCAGTTCTGTCCCAGAAGGTCACTGCTGAACCCTCAATTCATGACTCCAAGGCTATGACTCAATTTAAGCACTGTTTCACCAAGTCTGAAGATGGGTTTCTGTACTGTGAGGGCCTTAAAGTGCATGACATTATGGAATCTGTTGAGAGAAGGCCATTCTATTTGTACAGTAAGCCTCAGATTACTAGAAATGTCGAAGCCTATAGGAATGCCTTGGAGGGTTTGAGCTCTATAATTGGTTATGCCATCAAGGCCAACAATAATTTAAAGATTCTGGAGCATTTGAGGCAGTTGGGTTGTGGTGCTGTGCTTGTAAGTGGGAATGAACTTAGACTGGCTCTTCGTGCAGGGTTTGATCCCACAAGGTGTATCTTTAATGGCAATGGGAAAATCTTGGAGGATTTGGTCTTGGCTGCCAAAGAAGGTGTTTTTATCAATATTGATAGTGAATTTGACTTGGAAAACATTGTAGCAGCTGCAAGAATTGCTAGAAAGAGGGTGAATGTTTTACTTCGGATAAATCCTGATGTGGATCCACAGGTCCATCCTTATGTTGCAACTGGGAATAAGAACTCCAAGTTTGGCATAAGAAATGAAAAGCTGCAGTGGTTTCTAGATGCTGTGAAGGAGCATCCTAATGAGTTAAAGCTTGTAGGGGCCCACTGCCATCTTGGCTCAACAATTACCAAGGTGGACATTTTTAAGGATGCTGCAATTATTATGGTCAACTACATTGACCAAATCCGAGATCAGGGTTTTGAAGTTGATTATTTAAATATTGGTGGTGGACTTGGGATAGATTATTATCATGCTGGTGCTATTCTTCCTAAACCTAGAGATCTCATTGATACTGTACGAGAGCTTGTCCTTTCCCGTAATCTTAATCTCATCATTGAACCAGGGAGATCACTCATTGCAAACACTTGTTGCTTAGTTAACCGGGTCACAGGTGTTAAAACTAATGGATCTAAGAACTTCATTGTGATTGATGGAAGCATGGCTGAACTTATCCGTCCTAGTCTTTATGATGCTTACCAGCATATAGAGCTGGTTTCCCCTGCCCCAGAAAATGCTGAGACAGCAAACTTTGATGTTGTTGGCCCTGTCTGTGAGTCTGCAGATTTCTTAGGAAAAGATAGACAACTTCCAACTCCAGCCAAGGGTACTGGTCTGGTTGTCCATGATGCTGGTGCTTATTGTATGAGTATGGCATCAACTTACAATCTAAAGATGCGGCCTCCTGAGTATTGGGTTGAAGACGATGGATCAGTGAGCAAAATCAGACATGGGGAGACATTTGAAGACCACGTGCGGTTTTTTGAGGGCCTTTGA 1470 0.4265 MAASHSHLLHHSPSLSKTFNHSLNQNPFTQNLILPLKATNKPRILRAVLSQKVTAEPSIHDSKAMTQFKHCFTKSEDGFLYCEGLKVHDIMESVERRPFYLYSKPQITRNVEAYRNALEGLSSIIGYAIKANNNLKILEHLRQLGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKILEDLVLAAKEGVFINIDSEFDLENIVAAARIARKRVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKEHPNELKLVGAHCHLGSTITKVDIFKDAAIIMVNYIDQIRDQGFEVDYLNIGGGLGIDYYHAGAILPKPRDLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNRVTGVKTNGSKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPENAETANFDVVGPVCESADFLGKDRQLPTPAKGTGLVVHDAGAYCMSMASTYNLKMRPPEYWVEDDGSVSKIRHGETFEDHVRFFEGL. 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05378 489 PANTHER DIAMINOPIMELATE DECARBOXYLASE 65 486 - -
Seca8g05378 489 Gene3D Alanine racemase 104 349 IPR029066 -
Seca8g05378 489 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 127 145 IPR022653 -
Seca8g05378 489 NCBIfam diaminopimelate decarboxylase 74 483 IPR002986 GO:0008836|GO:0009089
Seca8g05378 489 FunFam Diaminopimelate decarboxylase 340 483 - -
Seca8g05378 489 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 106 352 IPR022644 GO:0003824
Seca8g05378 489 SUPERFAMILY PLP-binding barrel 97 353 IPR029066 -
Seca8g05378 489 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 260 273 IPR000183 GO:0003824
Seca8g05378 489 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 342 361 IPR000183 GO:0003824
Seca8g05378 489 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 127 145 IPR000183 GO:0003824
Seca8g05378 489 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 443 456 IPR000183 GO:0003824
Seca8g05378 489 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 147 159 IPR000183 GO:0003824
Seca8g05378 489 Hamap Diaminopimelate decarboxylase [lysA]. 84 487 IPR002986 GO:0008836|GO:0009089
Seca8g05378 489 FunFam Diaminopimelate decarboxylase 104 349 - -
Seca8g05378 489 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 87 483 IPR009006 GO:0003824
Seca8g05378 489 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 298 311 IPR022657 -
Seca8g05378 489 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 353 443 IPR022643 GO:0003824
Seca8g05378 489 SUPERFAMILY Alanine racemase C-terminal domain-like 327 484 IPR009006 GO:0003824
Seca8g05378 489 CDD PLPDE_III_DapDC 98 464 IPR002986 GO:0008836|GO:0009089
Seca8g05378 489 PRINTS Diaminopimelate decarboxylase signature 453 475 IPR002986 GO:0008836|GO:0009089
Seca8g05378 489 PRINTS Diaminopimelate decarboxylase signature 233 242 IPR002986 GO:0008836|GO:0009089
Seca8g05378 489 PRINTS Diaminopimelate decarboxylase signature 145 162 IPR002986 GO:0008836|GO:0009089
Seca8g05378 489 PRINTS Diaminopimelate decarboxylase signature 370 388 IPR002986 GO:0008836|GO:0009089
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05378 Seca-Chr8 144733792 144739623 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05378 K01586 - gmx:100791677 883.248