Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05318 ATGCTGAGCTGGTCATCATCACGGCAGAGTGATCTTCAGCATCAGCAGAGTTTCCACCAGTTCTCATTCATGGCGGCTGTGGTTGGCTCCTCTGCTGCTACTGCTCTTCCCTTCTCTCCCAAACTCGGCCGCTCTTCTCCTCTTCTGACCTCTCAAATATCCATCCTTTCCAAATCCTCCTTCAGTCTCGCTCGAGTTTCTCTCAACCCCAAATGCAACCTTGTTTCCAAAAATTCTATTCCCCAAAACGGGATCGCTTCTAAGCCCTCGCCTTTCGAGTTGCTTAAGACTTCTGCAGCTGATAAGATGGATACCTTCCTCTTCACCTCAGAATCTGTAAACGAAGGTCACCCTGACAAGATCTGTGACCAGGTTTCAGATGCCATCCTCGATGCATGCTTGGAGCAAGACCCAGAGAGCAAGGTTGCCTGTGAGACCTGTACGAAAACTAACATGGTTATGGTCTTTGGTGAAATCACAACTAAGGCTAAGGTGAACTATGAGAAAATAGTTCGAGACACTTGCAGGGGTATTGGGTTCGTTTCAGCTGATGTTGGTCTCGATGCTGACAAGTGCAATGTTCTTGTCAACATTGAGCAACAGAGCCCTGATATTGCCCAAGGAGTTCATGGTCACATGACCAAAAAACCTGAGGAAATTGGAGCTGGTGACCAAGGCCACATGTTTGGCTATGCTACAGATGAAACACCTGAACTAATGCCACTTACTCATGTGCTTGCTACTAAACTTGGTGCCAAGCTCACTGAAGTCAGAAAGAATAAGACATGCCCCTGGCTGAGGCCTGATGGTAAAACCCAAGTGACTGTTGAGTACAGGAATGATAATGGGGCCATGGTCCCTGTCCGTGTGCACACTGTCCTCATCTCAACTCAACATGATGAAACTGTAACGAATGATCAGATTGCCAAAGATTTAAAAGAGCATGTAATAAAACCAGTCATCCCAGCTGAATACCTTGATGACAAGACTATCTTCCACCTGAACCCTTCAGGTAGGTTTGTGATTGGTGGACCCCATGGAGATGCAGGACTCACTGGCCGGAAGATCATTATTGATACCTATGGAGGGTGGGGTGCTCATGGTGGAGGTGCCTTCTCAGGCAAGGATCCAACCAAGGTGGATAGGAGTGGTGCTTACATTGTTAGGCAGGCAGCAAAAAGTGTGGTAGCTTCAGGACTTGCCCGTCGTTGTATTGTGCAGGTTTCTTATGCAATTGGAGTGCCAGAGCCACTGTCCGTGTTTGTGGATACCTACAAAACGGGCAAGATTCCAGACAAGGATATTTTGGCTTTGATTAAGGAGACTTTTGACTTCAGGCCTGGAATGATTGCCATCAATCTTGACCTCACAAGAGGAGGCAACTTCAGGTACCAGAAGACTGCTGCTTATGGGCATTTTGGACGTGACGATCCTGATTTTACATGGGAGACCGTGAAGATTCTCAAGCCCAAGGCTTGA 1479 0.474 MLSWSSSRQSDLQHQQSFHQFSFMAAVVGSSAATALPFSPKLGRSSPLLTSQISILSKSSFSLARVSLNPKCNLVSKNSIPQNGIASKPSPFELLKTSAADKMDTFLFTSESVNEGHPDKICDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVNYEKIVRDTCRGIGFVSADVGLDADKCNVLVNIEQQSPDIAQGVHGHMTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYRNDNGAMVPVRVHTVLISTQHDETVTNDQIAKDLKEHVIKPVIPAEYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILALIKETFDFRPGMIAINLDLTRGGNFRYQKTAAYGHFGRDDPDFTWETVKILKPKA. 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05318 492 Hamap S-adenosylmethionine synthase [metK]. 104 492 IPR002133 GO:0004478|GO:0005524|GO:0006556
Seca8g05318 492 ProSitePatterns S-adenosylmethionine synthase signature 2. 368 376 IPR022631 GO:0004478|GO:0006556
Seca8g05318 492 Gene3D - 113 381 - -
Seca8g05318 492 FunFam S-adenosylmethionine synthase 113 229 - -
Seca8g05318 492 NCBIfam methionine adenosyltransferase 107 489 IPR002133 GO:0004478|GO:0005524|GO:0006556
Seca8g05318 492 SUPERFAMILY S-adenosylmethionine synthetase 217 341 IPR022636 GO:0004478|GO:0006556
Seca8g05318 492 Gene3D - 219 483 - -
Seca8g05318 492 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 103 491 IPR002133 GO:0004478|GO:0005524|GO:0006556
Seca8g05318 492 FunFam S-adenosylmethionine synthase 236 343 - -
Seca8g05318 492 FunFam S-adenosylmethionine synthase 364 483 - -
Seca8g05318 492 Gene3D - 106 344 - -
Seca8g05318 492 Pfam S-adenosylmethionine synthetase, N-terminal domain 106 203 IPR022628 GO:0004478|GO:0006556
Seca8g05318 492 SUPERFAMILY S-adenosylmethionine synthetase 105 211 IPR022636 GO:0004478|GO:0006556
Seca8g05318 492 ProSitePatterns S-adenosylmethionine synthase signature 1. 221 231 IPR022631 GO:0004478|GO:0006556
Seca8g05318 492 CDD S-AdoMet_synt 107 486 - -
Seca8g05318 492 Pfam S-adenosylmethionine synthetase, C-terminal domain 342 483 IPR022630 GO:0004478|GO:0006556
Seca8g05318 492 Pfam S-adenosylmethionine synthetase, central domain 219 340 IPR022629 GO:0004478|GO:0006556
Seca8g05318 492 SUPERFAMILY S-adenosylmethionine synthetase 342 488 IPR022636 GO:0004478|GO:0006556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05318 Seca-Chr8 143808379 143811659 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05318 K00789 - gmx:100805448 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05318 8 143808379 143811659 Seca8g05318 8 143808379 143811659 ECH