Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05312 ATGGCTTTGATATTCCTCTTTGCTATTTTACTCTTTTTGGCTCCTTCAAGCAATGCCTATTGGCCACCTTCACCTGGCTACTGGCCAAGTTCCAAATTCAGGTCTATGAGCTTTTACAAAGGGTTTAGAAACCTCTGGGGACCTTCTCACCAAAGCCTAGATCAAAATGCATTAACAATTTGGCTTGACAGAACCTCAGGAAGTGGCTTCAAGTCAGTTCGTCCATTTCGATCTGGGTACTTTGGTGCTTCCATTAAGCTTCATCCTGGCTATACTGCAGGAGTTATAACAGCTTTTTATCTTTCTAACGATGAAGCACATCCAGGCTTCCATGATGAAGTGGACATTGAGTTTCTAGGGACAACATTTGGCAAGCCTTATACTTTGCAGACAAATGTTTATATAAGAGGAAGTGGGGATGGGAAAATTATAGGCAGAGAGATGAAGTTTCATCTCTGGTTTGATCCTACTAGAGATTTTCATCACTATGCTATACTGTGGAGTCCTAAGGAAATAATGTAA 522 0.41 MALIFLFAILLFLAPSSNAYWPPSPGYWPSSKFRSMSFYKGFRNLWGPSHQSLDQNALTIWLDRTSGSGFKSVRPFRSGYFGASIKLHPGYTAGVITAFYLSNDEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFHLWFDPTRDFHHYAILWSPKEIM. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05312 173 Gene3D - 18 173 - -
Seca8g05312 173 SUPERFAMILY Concanavalin A-like lectins/glucanases 60 172 IPR013320 -
Seca8g05312 173 Pfam Glycosyl hydrolases family 16 40 172 IPR000757 GO:0004553|GO:0005975
Seca8g05312 173 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 35 173 IPR044791 GO:0004553
Seca8g05312 173 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 17 173 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05312 Seca-Chr8 143711569 143713809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05312 1 173 Glycoside Hydrolase AT2G36870 83.237 9.45e-110 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05312 K08235 - gmx:100796698 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05312 8 143711569 143713809 Seca8g05312 8 143711569 143713809 ECH