Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05298 ATGGCAGCAACCTCAACATCACTCGTCTCCCCCAACCTCCGTTCTCTCAACTCTCAACCTTTCTCTTCCAATCTCACCTTCTTCCAAAATGTCCATTCTGCCCTCTCCCTCTCTTCTGCTAAACCCTGCCGTGGCATCGTTGCCATGGCTGGCTCTGGCAAGTTCTTTGTTGGTGGCAACTGGAAGTGTGAGGGATTGATCATAAACACCAGACTTTCTGATTCTGTCATAATATTTTTGAGAAGCAGCTTCGGTAGAAGTTATCTGGCTAATGGGACAAAAGACTCCATCAGTAAGCTTGTTTCTGACTTGAACAGTGCAACATTGGAGCCTGATGTTGATGTTGTTGTTGCACCTCCCTTTCTGTACCTCGATCAGGTGAAGAACTCAATTACCGATAGGATTGAGATATCTGCCCAGAATTCTTGGGTGGGAAAAGGTGGGGCTTTCACCGGAGAAATCAGTGTGGAGCAACTAAAAGACCTTGGCTGCAAGTGGGTTATTCTTGGACATTCAGAGCGAAGACATATAATTGGAGAAAATGATGAGTTTATAGGAAAGAAAGCTGCTTATGCATTGAACGAGGGTCTTGGAGTTATAGCATGTATAGGGGAACTGTTAGAAGAAAGAGAAGCTGGGAAAACTTTTGATGTTTGTTTCCAGCAATTGAAGGCTTTTGCAGATGCAGTGCCAAGTTGGGATAATGTAGTTATTGCATATGAGCCTGTATGGGCCATTGGAACTGGTAAAGTGGCCACACCCCAGCAAGCCCAGGAAGTACACGCAGCTGTCCGTGATTGGCTTAAAAAGCAAGTCTCAGCTGAAGTTGCATCTAAAACGCGAATTATTTATGGAGGGTCCGTAAATGGGGGTAACTGTGCTGAGCTCGCAAAGCAAGAAGATATTGATGGATTCCTAGTTGGTGGTGCTTCATTAAAGGGTCCTGAGTTTGCTATCATTGTCAATTCAGTCACATCCAAGAAAGTTGCGGCTTAG 996 0.4498 MAATSTSLVSPNLRSLNSQPFSSNLTFFQNVHSALSLSSAKPCRGIVAMAGSGKFFVGGNWKCEGLIINTRLSDSVIIFLRSSFGRSYLANGTKDSISKLVSDLNSATLEPDVDVVVAPPFLYLDQVKNSITDRIEISAQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHIIGENDEFIGKKAAYALNEGLGVIACIGELLEEREAGKTFDVCFQQLKAFADAVPSWDNVVIAYEPVWAIGTGKVATPQQAQEVHAAVRDWLKKQVSAEVASKTRIIYGGSVNGGNCAELAKQEDIDGFLVGGASLKGPEFAIIVNSVTSKKVAA. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05298 331 ProSitePatterns Triosephosphate isomerase active site. 239 249 IPR020861 GO:0004807
Seca8g05298 331 CDD TIM 55 322 IPR000652 GO:0004807
Seca8g05298 331 Hamap Triosephosphate isomerase [tpiA]. 53 323 IPR022896 GO:0004807|GO:0006096
Seca8g05298 331 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 81 323 IPR000652 GO:0004807
Seca8g05298 331 Gene3D Aldolase class I 37 330 IPR013785 -
Seca8g05298 331 NCBIfam triose-phosphate isomerase 90 313 IPR000652 GO:0004807
Seca8g05298 331 SUPERFAMILY Triosephosphate isomerase (TIM) 90 323 IPR035990 GO:0004807
Seca8g05298 331 FunFam Triosephosphate isomerase 77 325 - -
Seca8g05298 331 Pfam Triosephosphate isomerase 90 323 IPR000652 GO:0004807
Seca8g05298 331 PANTHER TRIOSEPHOSPHATE ISOMERASE 50 323 IPR000652 GO:0004807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05298 Seca-Chr8 143573598 143579041 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05298 K01803 - gmx:100798459 539.265