Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05259 ATGCATCTTGTGGAGGCAAATCTTCAAAAGGAACCTCGCATTGCGGAACTTAGGAATCACTGTAGAATAATTCAGACAACTGAGTTAGCTGCTGCTCAAGAGAAATTAAATGAGCTTGAGAAGCAGAAAGAAGAAGTGTCGAAGCTATATTCCGCAGCATCCCTTCTCCAAAGAATTCAAGAGGCTATGAATAAGACAGAAGAGGAATCAGAAAATCTGCACCAGGAAGTCCTTGACAGAGAGATTGACCTTGCAGCGTTTTTGCAGAAATACAAGAAACTACGCACCGCTTACCACAGGAAAAGTCTCGTACATCTTGCAGCTAAAACATCAAATATATGA 342 0.4123 MHLVEANLQKEPRIAELRNHCRIIQTTELAAAQEKLNELEKQKEEVSKLYSAASLLQRIQEAMNKTEEESENLHQEVLDREIDLAAFLQKYKKLRTAYHRKSLVHLAAKTSNI. 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05259 113 Coils Coil 22 76 - -
Seca8g05259 113 ProSiteProfiles VPS37 C-terminal domain profile. 33 113 IPR009851 -
Seca8g05259 113 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37 3 111 - -
Seca8g05259 113 SUPERFAMILY Endosomal sorting complex assembly domain 46 101 IPR037202 -
Seca8g05259 113 FunFam Vacuolar protein-sorting-associated protein 37 homolog 1 37 106 - -
Seca8g05259 113 Pfam Modifier of rudimentary (Mod(r)) protein 2 102 IPR009851 -
Seca8g05259 113 Gene3D Helix hairpin bin 37 107 IPR029012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05259 Seca-Chr8 143083854 143086670 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05259 K12185 - gmx:100305851 172.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05259 8 143083854 143086670 Seca8g05259 8 143083854 143086670 ECH