Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05235 ATGTCTGTTGGAAATGAATCTCCTGTTGTTCAAAGCTGTATGTCAACTAATGGTGGTTCTATGAGGATGATTGATTGCCATAAGAAAAACATTGATAACATGAAAACAGTGGATAAATTGTCTGTCTTTTACAGAAGTAGAGTGTATTTTAAACTATCCCTCAAGGGTCGGTTAAAGCCAGCTCCATCTACACTTGGTGATGCAGCTCTAGCTCTACATTATGCAAATGTGATTGTATTGATAGAGAAGATAGTGTCAGCACCTCACCTTATTGATCTTCAAACCAGAGATGATCTGTACAATATGTTACCAACCACTATAAGAACCTCTCTGAGGGCTAAGCTTAAATGGTATGCCAAAAGCAAGCCTAATACGGAGTGGAGTCTAGTACTCACACAGATATTGGAATGGTTGGCCCCATTGGCACACAACATGGTAAGGTGGCATTCTGAGAGGAATTTTGAGAAGGAGCATACTACTTTGAAAGCTAATGTTTTACTCGTACAAACTCTTTACTTTGCAAACCAAGCTAAAACTGAAGCTGCAATGGTTGAACTCCTTGTTGGTCTACACTATGTAATGGCGTGGATGAAGAAAGGATTGGTGGCGTACAAGATATACAGAGCCCTGAGCTACGGTGTGTCGCCGTTGATCCGGCTTCATCTACGATGGCGCAGGTTCCGCGGCCTGGAGCACCCGCGGCGGTGGCCGGAGCGGCTGGGTCATCCCTCTCAGCCTCGCCGTCCAGGTCCCCTCGTCTGGTTCCACGCCGTTTCCTTGGGCGAAGGGATGATTGCGATTCCGGTCATCAAACACTGCATTAAGATGATGCCTCACTTGAATGTGCTCATGACCACCACCACACTCTCTGCATTTGAAGTATTAAGCAACTCGCTTCCAAGTGAAATCATTTTACAGTTTTCACCAGTTGATACTCCTGCTTCCATACACTCTTTTCTTCATTACTGGAAACCAAATGCTATTGTGCTAATGGAAAGTGAGCTGTGGCCAAATCTTATCATGGATGCTTCCAGAAATGGTATAACACTGGCACTGTTAAATGCTCGGATTTCTGAAAAATCCTTCAAAGTTTGGTCAGGACCAATGTTTCTTCCATTAATTTCATTGATGCTATCCAAGTTTTCCTTGATTGTTCCATTGAGTACAGAGCAGGGTATCCGGTTTCAGCTACTGCAAGCCCCTCCTTATATCATTAACTTTTCTGGTGATCTAAAGTATGTAATAGAAGACATTGGAGTCAATGAAAGAGGCAGAAAAAATATTGATAATCTGAAACGACAGCTTTCTCACAAGCAGGTTTGGATGGCTTCTTCCATTCATTGGGGAGAAGAAGAAATAATATTAGGAGTTCACACTGTCCTTATGAAGCTGCTACCTAATATAATGACTATTATTGTCCCTCGTCATCCACAGCAAGGACGAGAGATTGCCAAAAAATTGGAGAAAGAAGGACAAAATGTAGTTTTGAGGTCTCAACACAAGAAGTTTAAGCCAGGAACAAATATTTATGTGGTGGACACTTTGGGTGAATTAAGACACTTGTACACATTAACACCAATAGCTGTGATTGGGGGTTCATTCCTCCCCAGTTTATCTGGCCATAATATCTCTGAAGCTGCTGCAGCTGGCTGTGCTATTTTGACAGGTTGTCATGTTGGGCATTTCTCCCACATGGTACTGGAAATGCAACAATCAAATCCTTTGTCAGTCCTTCAGGTTTCTGGAAAACTTGAGCTTGAAAAAGTCCTCATTGAGCTCTTCACAAATACAACACTTCTGGAAGCACGTCGTAGAGCTGCAAAGGAAGCATTTTGTAGTTTGTCTAGTGACATTGTTGTGAATATATGGAGTTTGCTAAATTTTCATATTTTTAGTAGATTGTCTGCAAAGGAAACTACGACTCTGTGA 1929 0.4209 MSVGNESPVVQSCMSTNGGSMRMIDCHKKNIDNMKTVDKLSVFYRSRVYFKLSLKGRLKPAPSTLGDAALALHYANVIVLIEKIVSAPHLIDLQTRDDLYNMLPTTIRTSLRAKLKWYAKSKPNTEWSLVLTQILEWLAPLAHNMVRWHSERNFEKEHTTLKANVLLVQTLYFANQAKTEAAMVELLVGLHYVMAWMKKGLVAYKIYRALSYGVSPLIRLHLRWRRFRGLEHPRRWPERLGHPSQPRRPGPLVWFHAVSLGEGMIAIPVIKHCIKMMPHLNVLMTTTTLSAFEVLSNSLPSEIILQFSPVDTPASIHSFLHYWKPNAIVLMESELWPNLIMDASRNGITLALLNARISEKSFKVWSGPMFLPLISLMLSKFSLIVPLSTEQGIRFQLLQAPPYIINFSGDLKYVIEDIGVNERGRKNIDNLKRQLSHKQVWMASSIHWGEEEIILGVHTVLMKLLPNIMTIIVPRHPQQGREIAKKLEKEGQNVVLRSQHKKFKPGTNIYVVDTLGELRHLYTLTPIAVIGGSFLPSLSGHNISEAAAAGCAILTGCHVGHFSHMVLEMQQSNPLSVLQVSGKLELEKVLIELFTNTTLLEARRRAAKEAFCSLSSDIVVNIWSLLNFHIFSRLSAKETTTL. 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05235 642 FunFam 3-deoxy-D-manno-octulosonic acid transferase 424 612 - -
Seca8g05235 642 Gene3D Glycogen Phosphorylase B; 424 611 - -
Seca8g05235 642 FunFam 3-deoxy-D-manno-octulosonic acid transferase 235 413 - -
Seca8g05235 642 Gene3D - 234 414 IPR038107 -
Seca8g05235 642 Pfam Protein of unknown function (DUF668) 64 147 IPR007700 GO:0045927
Seca8g05235 642 PANTHER 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE 198 633 IPR039901 GO:0016740
Seca8g05235 642 Pfam 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 235 413 IPR007507 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05235 Seca-Chr8 142795406 142802006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05235 264 631 Glycosyltransferase AT5G03770 62.602 1.40e-155 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05235 K02527 - gmx:100809456 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05235 8 142795406 142802006 Seca8g05235 8 142795406 142802006 ECH
Seca8g05235 8 142795406 142802006 Seca2g04752 2 133796004 133799134 PCT