Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05154 ATGAGCAGGTCAGGGCAGCCCCCAGATTTGAAGAAGTATATGGACAAGAAGCTTCAGATCAAGCTGAATGCGAATCGGATGATTATTGGTACTCTCCGAGGCTTTGACCAGTTTATGAATTTAGTTGTTGACAATACAGTGGAAGTGAATGGCAATGAAAAAAATGATATAGGGATGGTGGTAATAAGAGGAAATAGTGTGGTTACTGTTGAGGCACTTGAACCTGTGAACAGGACATGA 240 0.4167 MSRSGQPPDLKKYMDKKLQIKLNANRMIIGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRT. 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05154 79 Gene3D - 1 76 - -
Seca8g05154 79 ProSiteProfiles Sm domain profile. 5 76 IPR047575 GO:0003723
Seca8g05154 79 CDD Sm_G 6 74 IPR034098 GO:0000387|GO:0005681
Seca8g05154 79 SMART Sm3 8 72 IPR001163 -
Seca8g05154 79 FunFam Small nuclear ribonucleoprotein G 1 76 - -
Seca8g05154 79 Pfam LSM domain 9 71 IPR001163 -
Seca8g05154 79 SUPERFAMILY Sm-like ribonucleoproteins 9 76 IPR010920 -
Seca8g05154 79 PIRSF Lsm7 5 78 - -
Seca8g05154 79 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN 3 78 IPR044641 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05154 Seca-Chr8 141548711 141550493 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05154 K11099 - gmx:100305530 157.532
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05154 8 141548711 141550493 Seca8g05154 8 141548711 141550493 ECH