Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05137 ATGGCATGGATAGAAGATAATGATGGGAATGGGAGAGAAAAGGAGTTAGTGGGAGAGAATGGTTTTTTGAAAGTGTCAGAGCCTTCTGTTAGTTCTAGTGGCTCTGTTGGGAATGTTGGTTCTGCAGCCAATCGGAGCTGTGAAGGGAAAGATGATCTCTCTTATGCCAACATTCTACGTTCGAGGAACAAGTTTGTGGACTCTCTTGCTCTGTATGAGCGCGTTCTGGAAAGTGATAGTGGAAATGTGGAGGCTCTCATTGGAAAAGGGATATGCCTGCAGATGCAGAATATGGGCAGGCTTGCTTTTGACAGTTTTACTGAGGCTATCAGGTTGGATCCTCAAAATGCTTGTGCTCTCACACATTGTGGTATTCTGTACAAAGAAGAAGGTCGTCTGATGGAGGCAGCTGAGTCATATCAAAAGGCTTTACGAGTGGATCCTTCATACAAAGCAGCTGCTGAATGCTTAGCCATTGTTTTAACGGATATTGGTACCAACATAAAGCTTGCAGGAAACACTCAGGAGGGAATTCAAAAATATTTTGAAGCTCTCAAAATAGATCCACATTATGCTCCAGCCTATTATAACCTTGGTGTGGTCTATTCTGAAATAATGCAATATGACATGGCCCTCACATTCTATGAAAAGGCTGCATCAGAGAGGCCTATGTATGCTGAAGCATATTGCAACATGGGTGTCATTTATAAAAATCGTGGTGATTTGGAAGCAGCTATTACTTGTTATGAGAGGTGTTTAGCCGTTTCGCCTAACTTTGAGATTGCCAAGAATAATATGGCTATAGCTTTGACAGATTTGGGAACAAAGGTTAAATTGGAAGGCGACATCAACCGAGGTGTGGCTTTTTATAAAAAAGCTTTGTATTACAATTGGCATTATGCTGATGCTATGTATAATCTTGGGGTTGCTTATGGTGAGATGCTTAAGTTTGATATGGCTATTGTGTTCTACGAACTTGCCTTCCACTTCAATCCACATTGTGCGGAAGCTTGTAACAATCTAGGCGTTATATATAAAGATCGTGACAACCTTGATAAAGCTGTAGAATGTTACCAGCTTGCTTTGTCAATCAAACCTAACTTTTCGCAGTCATTAAATAACCTTGGAGTTGTATACACTGTCCAGGGCAAGATGGATGCTGCTGCAAGTATGATTGAGAAAGCCATCATTGCAAATCCAACATATGCAGAAGCGTACAATAACCTAGGAGTTCTTTATAGAGATGCTGGTGATATTGCTCTAGCAATTAATGCTTATGAACAATGTCTTAAGATTGATCCTGACTCTCGAAATGCTGGCCAGAACCGCTTGCTTGCGATGAATTACATAGATGAAGGAAATGATGACAAACTTTTTGAGGCTCACAGGGACTGGGGTCGGCGATTTATGAGATTATATCCACAGTTCACATCATGGGACAACTCAAAAGATCCTGAACGGCCTCTTGTGATAGGATATGTATCTCCTGATTATTTTACACATTCTGTGTCATATTTCATAGAAGCTCCCCTTGTCTATCATGACTACACCAAATATAAAGTGATTGTTTATTCAGCAGTTGTCAAGGCAGATGCAAAAACCATTCGGTTTAGAGAGAAAGTCTTGAAGAAGGGTGGGATCTGGAAAGATATTTATGGTACTGATGAAAAGAAGGTTGCTGACATGGTTAGAGAAGATCAAGTTGATATTTTGGTAGAACTTACCGGTCATACTGCAAACAATAAGCTTGGAATGATGGCATGTCGACCTGCTCCAGTTCAGGTGACTTGGATTGGTTATCCCAATACAACAGGATTGCCTACAATTGATTATAGAATCACTGATTCACTGGCAGACCCTCCTGAAACAAAGCAGAAGTAG 1881 0.4078 MAWIEDNDGNGREKELVGENGFLKVSEPSVSSSGSVGNVGSAANRSCEGKDDLSYANILRSRNKFVDSLALYERVLESDSGNVEALIGKGICLQMQNMGRLAFDSFTEAIRLDPQNACALTHCGILYKEEGRLMEAAESYQKALRVDPSYKAAAECLAIVLTDIGTNIKLAGNTQEGIQKYFEALKIDPHYAPAYYNLGVVYSEIMQYDMALTFYEKAASERPMYAEAYCNMGVIYKNRGDLEAAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINRGVAFYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDIALAINAYEQCLKIDPDSRNAGQNRLLAMNYIDEGNDDKLFEAHRDWGRRFMRLYPQFTSWDNSKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYTKYKVIVYSAVVKADAKTIRFREKVLKKGGIWKDIYGTDEKKVADMVREDQVDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQK. 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05137 626 ProSiteProfiles TPR repeat profile. 403 436 IPR019734 GO:0005515
Seca8g05137 626 ProSiteProfiles TPR repeat profile. 117 150 IPR019734 GO:0005515
Seca8g05137 626 SMART tpr_5 117 150 IPR019734 GO:0005515
Seca8g05137 626 SMART tpr_5 192 225 IPR019734 GO:0005515
Seca8g05137 626 SMART tpr_5 301 334 IPR019734 GO:0005515
Seca8g05137 626 SMART tpr_5 369 402 IPR019734 GO:0005515
Seca8g05137 626 SMART tpr_5 335 368 IPR019734 GO:0005515
Seca8g05137 626 SMART tpr_5 403 436 IPR019734 GO:0005515
Seca8g05137 626 SMART tpr_5 158 191 IPR019734 GO:0005515
Seca8g05137 626 SMART tpr_5 226 259 IPR019734 GO:0005515
Seca8g05137 626 SMART tpr_5 267 300 IPR019734 GO:0005515
Seca8g05137 626 SMART tpr_5 83 116 IPR019734 GO:0005515
Seca8g05137 626 ProSiteProfiles TPR repeat profile. 158 191 IPR019734 GO:0005515
Seca8g05137 626 ProSiteProfiles TPR repeat profile. 192 225 IPR019734 GO:0005515
Seca8g05137 626 ProSiteProfiles TPR repeat region circular profile. 403 435 - -
Seca8g05137 626 Gene3D - 477 626 - -
Seca8g05137 626 Gene3D Tetratricopeptide repeat domain 53 154 IPR011990 GO:0005515
Seca8g05137 626 SUPERFAMILY TPR-like 266 438 IPR011990 GO:0005515
Seca8g05137 626 ProSiteProfiles TPR repeat region circular profile. 192 223 - -
Seca8g05137 626 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 39 626 - -
Seca8g05137 626 Pfam Tetratricopeptide repeat 301 331 IPR019734 GO:0005515
Seca8g05137 626 Pfam Tetratricopeptide repeat 124 149 IPR019734 GO:0005515
Seca8g05137 626 Pfam Glycosyl transferase family 41 481 624 IPR029489 -
Seca8g05137 626 ProSiteProfiles TPR repeat profile. 369 402 IPR019734 GO:0005515
Seca8g05137 626 Pfam TPR repeat 172 203 - -
Seca8g05137 626 Pfam Tetratricopeptide repeat 370 434 - -
Seca8g05137 626 SUPERFAMILY TPR-like 50 275 IPR011990 GO:0005515
Seca8g05137 626 FunFam probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY 267 465 - -
Seca8g05137 626 ProSiteProfiles TPR repeat region circular profile. 226 258 - -
Seca8g05137 626 ProSiteProfiles TPR repeat profile. 301 334 IPR019734 GO:0005515
Seca8g05137 626 ProSiteProfiles TPR repeat profile. 335 368 IPR019734 GO:0005515
Seca8g05137 626 ProSiteProfiles TPR repeat profile. 226 259 IPR019734 GO:0005515
Seca8g05137 626 ProSiteProfiles TPR repeat region circular profile. 117 149 - -
Seca8g05137 626 ProSiteProfiles TPR repeat profile. 83 116 IPR019734 GO:0005515
Seca8g05137 626 Pfam Tetratricopeptide repeat 226 259 IPR001440 GO:0005515
Seca8g05137 626 Pfam Tetratricopeptide repeat 335 368 IPR001440 GO:0005515
Seca8g05137 626 ProSiteProfiles TPR repeat region circular profile. 335 367 - -
Seca8g05137 626 Gene3D Tetratricopeptide repeat domain 272 476 IPR011990 GO:0005515
Seca8g05137 626 Gene3D Tetratricopeptide repeat domain 155 271 IPR011990 GO:0005515
Seca8g05137 626 SMART sel1 301 332 IPR006597 -
Seca8g05137 626 SMART sel1 226 257 IPR006597 -
Seca8g05137 626 SMART sel1 403 434 IPR006597 -
Seca8g05137 626 SMART sel1 335 366 IPR006597 -
Seca8g05137 626 SMART sel1 192 223 IPR006597 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05137 Seca-Chr8 141354214 141377204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05137 211 626 Glycosyltransferase AT3G11540 57.452 6.89e-154 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05137 K09667 - gmx:100776844 1192.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05137 8 141354214 141377204 Seca8g05137 8 141354214 141377204 ECH