Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05115 ATGCTGCTCCAAAAACCTCCTCTTGGTCCCATCGTCACGCGATCGGTGTGGTCTTCCAACCTCGAATTGGAATTCCAATTGATTCGCTCCGTAATTGATACATACCCTTTGATCTCAATGGACACAGAGTTTCCCGGTGTTGTTTTCCGCGGTGACCGTGGTTTCCAGGACGGTCGACCTGGGGCCAACTACGGCATACTGAAGTCGAATGTGGACCTTCTGCACCTGATCCAGGTTGGACTTACCCTCTCAGACAGCATGGGCAACCTCCCCAACCTCGGAACCTCCGAGTTCTTCATTTGGGAATTCAACTTCAGCGATTTTGACGTCTCGTGTGACCTCCACGCCCATGACTCCATTGAGCTCCTTCGCCGCCAAGGTATCGATTTTGAGAAGAACCGGGAATTGGGTATCAAAACGGTGCGTTTCGCTGAGCTAATGATGTCCTCTGGCCTTGTATGCAACAACTCCGTAAGCTGGGTTACTTTCCACAGCGCTTACGACTTTGGTTACCTGGTGAAAGTGCTGACTCAACTCCCTTTGCCGGAGGACCTCTCCAAGTTTTTGGTGCTGGTTAGGGTTTTTTTTGGGAATAGGGTTTTTGATGTGAAGCACTTGATGAAGTTCTGTTCGGGTCTCTATGGCGGCTTGGACAGGGTTTCCCAGTCCCTGAATGTGGAGCGGGTTGTAGGAAGATGTCATCAGGCTGGTTCAGATAGCTTGCTGACTCTTCACACTTTTGAGAAGATCAGGGAATTTTACTTTGGCAATGAAGATGATCTGCTGATCAAGTATGCTGGTGTCTTGTATGGCTTAGAGGTTTAA 825 0.4933 MLLQKPPLGPIVTRSVWSSNLELEFQLIRSVIDTYPLISMDTEFPGVVFRGDRGFQDGRPGANYGILKSNVDLLHLIQVGLTLSDSMGNLPNLGTSEFFIWEFNFSDFDVSCDLHAHDSIELLRRQGIDFEKNRELGIKTVRFAELMMSSGLVCNNSVSWVTFHSAYDFGYLVKVLTQLPLPEDLSKFLVLVRVFFGNRVFDVKHLMKFCSGLYGGLDRVSQSLNVERVVGRCHQAGSDSLLTLHTFEKIREFYFGNEDDLLIKYAGVLYGLEV. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05115 274 SUPERFAMILY Ribonuclease H-like 5 272 IPR012337 -
Seca8g05115 274 Pfam CAF1 family ribonuclease 16 139 IPR006941 -
Seca8g05115 274 Gene3D - 3 274 IPR036397 GO:0003676
Seca8g05115 274 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 12 273 IPR039637 GO:0004535|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05115 Seca-Chr8 141119673 141120497 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05115 K12581 - gmx:100790027 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05115 8 141119673 141120497 Seca8g05115 8 141119673 141120497 ECH