Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05047 ATGGAGAAGAAACGAAAGATTGTGCAGTATAGAGAGAGGTTGGATAGGACCCTTGCCTCACCTGATCTTACAAATGATGAGACACTCAAAAAGCTAGTCAAAAGTCAACTCCTACCTTCATCAGAACCTGAAATAGAAGGTTCAGGATATAAGGAGCAAGTTGTAGAAACCAAGACTGCAGAGGTATCTAACTTTCTTAGTATGTTGAGGAGTGCTTCAGATGATTGTGGAACATCACACACTGATTGGAAATTAAAACAGGATGGTGAAGAGTTCCGTGTTATGTATCGCGAAGGACCAGAGGGAACTCCCTTTCATACATTGTTAGTAGAAGGCTTTGTAGATGGCCCTGTTGATGTTTGTTTATGTATCTCATGGCAGACATCCCTTTACAAAAAATGGTGGCCACAGTCTACTATTCCCAGTTTCAAAATCTTATCATCTGAATGTTTGCACGAGGCCCGGATCGGGGAACAAATATCACTAGTGAGGGTGAAGGTTTCTTGGCCTCTGCATATGAGAGAAGCTGTAGTGCACTATTATCTGTTTGAATACTTTCAAGATGACTTAATTGTTGTTCTTACGAATTCGGTCCCTGATTCAAAAAACATGGCCCTTCATGGTTTCAACAATGAAGCAATTCCCGAAGCAAAGGATGTCGTGAGAGTTGATCTGGTGGGAGGCTTTGCTTTGCAAAAGGTGACATCAGGAAGAAGTTACTTTCGGACAATAGCAAATATGGATATAAAGCTGGATTTTGTCCCTCCAACCTTGATTAACTTTATTTCAAGGCAGCTCATTGGCAATGGTTTCAGACTTTATCAGAAGGTTGTGGCTTCTATGATGAGCCATGATAAAGAAGAATTCAGCAAGGCCTTGGGAGACCCATTGTATGCTAGAATTCGGGAAGCTCTATATAGCACTAGTGAATCAAAGGTGATGAATGGAGAGCTTCAGCAGGTTGCAAGAATTCTCCCTGCTGAAGATCTTGTTGAAAGTATGCAAGGTGAGGCAAAAGATGTATCTAAAGAGGATGAAAGCAATCAAAATGCAAATAAAGCCATGTCAATGGCAATGAATGCAGTAGTACTACAGAATAGCAAAGTATTTGGTGAGATTGTAGAAGTAGATAGGGAAGAGATTGTACAAAGTGAGGAAGATGATGAGAAAGTAAATGAAATTCCAAATAAGGAAGTTGATGCTAGTGTTCAAAAGGGAAAGAGGAGTGTATATATCCGCTCAGAGGTAGAACAGGCTCTAGAAACATTAGACAAGGCCATTTCAATGGTTCGGGAAAACCGACTTCATTCCCGGATAGCCTTTTCTAACTCTGCCAATGAAGAGTCCCCATGCATGATAAAAGATGGTAGAATTGATTCACATTCCTCAAATCTTATTCAGCCATGTTCTGAAAATGAGGTTGGTGTTGAATTACCAAATAGAGATTTGCTGGAGGGAACTCTGCAAGATGCACTTGGGACTAACTCTGGCATCCAAAATTTCAGGTATACAGGAACAAATCCTAACTTAAAGGAAGTAAATTCTAACAAAGGAGTACTAACATCATCAGAGCAGAATCTTTCAAGACCTATTGAGGCAAGCCAGGTTACTTCATATTCTTTGGAAAATGGAGCAATTCTGGACCAAACAACATGCAGTAACAAGCCATTAAGCACTGATTTGGTCCAAGACATTCCTTCAAATGACAAGGATAAGTCAAGCAGGCACAAAAAATTAAACACCATTGTAACTCAAGCACTTTTCCTGGTCTGCGAGTCATGTCGGTGCATTCAACCCGTCGATGATTCGGTTGACTATTTCGAAATTTTTGGGACGGAGAGGAAGTATGACATAGAGGGAAGCAATTTGGAGAGAAAGTACAAAGAGTGGCAAAAGAAACTACATCCTGATCTAGTACATTCAAAATCGCAGAAAGAAAGAGATTTTGCTGCTGAACAATCTGCGAGGGTGATTGATGCATATCGGACACTTAGCAAGCCTTTGTCAAGAGCGATTTACATGCTGAAACTTCACGGTGTAGAAGTTGATGAGGAACAGACAGTTTCGGATCCAGAATTACTAGCAGAGATTATGGAAATCAGGGAAGCAGTTGAAGAAGCAACTAACTCTGAGGCTTTGAATCAAATTCGTTCCCAGATGCAAGAGAAACTGCATAATTGGTCTAATGCCTTTGCTCATGCTTTTCAAAGTCAAAACTTTGAAGAGGCAAAAATTGCAATTAGGAGAATGACTTACTATAGTCGTGTGATTGATGCAGTTGTAAAGAAGCTTTGA 2295 0.4031 MEKKRKIVQYRERLDRTLASPDLTNDETLKKLVKSQLLPSSEPEIEGSGYKEQVVETKTAEVSNFLSMLRSASDDCGTSHTDWKLKQDGEEFRVMYREGPEGTPFHTLLVEGFVDGPVDVCLCISWQTSLYKKWWPQSTIPSFKILSSECLHEARIGEQISLVRVKVSWPLHMREAVVHYYLFEYFQDDLIVVLTNSVPDSKNMALHGFNNEAIPEAKDVVRVDLVGGFALQKVTSGRSYFRTIANMDIKLDFVPPTLINFISRQLIGNGFRLYQKVVASMMSHDKEEFSKALGDPLYARIREALYSTSESKVMNGELQQVARILPAEDLVESMQGEAKDVSKEDESNQNANKAMSMAMNAVVLQNSKVFGEIVEVDREEIVQSEEDDEKVNEIPNKEVDASVQKGKRSVYIRSEVEQALETLDKAISMVRENRLHSRIAFSNSANEESPCMIKDGRIDSHSSNLIQPCSENEVGVELPNRDLLEGTLQDALGTNSGIQNFRYTGTNPNLKEVNSNKGVLTSSEQNLSRPIEASQVTSYSLENGAILDQTTCSNKPLSTDLVQDIPSNDKDKSSRHKKLNTIVTQALFLVCESCRCIQPVDDSVDYFEIFGTERKYDIEGSNLERKYKEWQKKLHPDLVHSKSQKERDFAAEQSARVIDAYRTLSKPLSRAIYMLKLHGVEVDEEQTVSDPELLAEIMEIREAVEEATNSEALNQIRSQMQEKLHNWSNAFAHAFQSQNFEEAKIAIRRMTYYSRVIDAVVKKL. 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05047 764 ProSiteProfiles dnaJ domain profile. 605 677 IPR001623 -
Seca8g05047 764 Gene3D - 682 764 IPR036386 GO:0051259
Seca8g05047 764 NCBIfam Fe-S protein assembly co-chaperone HscB 616 756 IPR004640 GO:0001671|GO:0044571|GO:0051087
Seca8g05047 764 SMART dnaj_3 604 669 IPR001623 -
Seca8g05047 764 FunFam Iron-sulfur cluster co-chaperone protein HscB, mitochondrial 567 676 - -
Seca8g05047 764 SUPERFAMILY HSC20 (HSCB), C-terminal oligomerisation domain 682 761 IPR036386 GO:0051259
Seca8g05047 764 Gene3D DnaJ domain 564 676 IPR036869 -
Seca8g05047 764 SUPERFAMILY Bet v1-like 78 278 - -
Seca8g05047 764 Coils Coil 413 433 - -
Seca8g05047 764 CDD DnaJ 605 665 IPR001623 -
Seca8g05047 764 Pfam HSCB C-terminal oligomerisation domain 690 760 IPR009073 GO:0051259
Seca8g05047 764 PANTHER POLYKETIDE CYCLASE/DEHYDRASE/LIPID TRANSPORT SUPERFAMILY PROTEIN 1 558 - -
Seca8g05047 764 Gene3D - 81 287 IPR023393 -
Seca8g05047 764 FunFam HscB mitochondrial iron-sulfur cluster co-chaperone 682 764 - -
Seca8g05047 764 SUPERFAMILY Chaperone J-domain 604 678 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05047 Seca-Chr8 139876968 139888788 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05047 - - gmx:100798284 822.387