Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04821 ATGGGAATAGTTAGTAATGCATACTCAAATGGGTCTGTTCAGATTCAGAACTGCAATGGCCTAGAAGAGAAGCTTGATGACCTTCGTGGCTTTCTTGGTAAGGCTGATGGTGATCCTTTGAGGATTGTTAGTGTTGGAGCTGGTGCTTGGGGCAGTGTTTTTGCAGCTTTGTTGCAAGATACTTATGGTCAATTCCGGGACAAGGTACAAATCAGGATATGGAGAAGGGCAGGAAGGAGAGTTGATAGAGCCACTGCAGAACATCTCTTTGAAGTTATCAACTCAAGGGAGGATGTGTTGAGGAGATTGATTAGGCGTTGTGCTTATCTGAAATATGTTGAGGCAAGGCTTGGTGATAGGACTCTATTTGCTGATGAGATTCTGAAAGATGGGTTTTGCTTGAATATGATTGATACACCACTTTGTCCATTGAAAGTTGTGACAAACTTGCAGGAAGCTGTTTGGGATGCTGATATTGTGGTTAATGGCTTGCCTTCAACTGAGACACGTGAGATCTTTGAAGAGATTAGTAAATATTGGAAGGAGAGAATCACAGTGCCTGTAATAATCTCTTTAGCAAAGGGTATAGAGGCTGCATTGGAACCTGTTCCCCATATTATAACTCCCACAAAAATGATCAACCAAGCAACTGGTGTGCCCATGGAGAACATACTTTATCTTGGTGGTCCAAATATTGCCTCAGAAATCTACAACAAAGAGTATGCCAATGCTCGAATATGTGGAGCTGAGAAATGGAGGAAACCTCTGGCAAAGTTTCTAAGGCAACCACATTTTATTGTTTGGGACAATAGTGACCTTGTCACCCATGAGGTCATGGGTGGCTTGAAAAATGTCTATGCAATTGGTGCAGTATATGTCTTCTCTTTTTTGTTGTTGTCAGGAATGGTAGCAGCCCTTACCAATGAGAGTGCTACCAGCAAATCTGTGTACTTTGCACACTGTACATCAGAGATGATATTTATCACTCACTTATTGGCTGAAGAACCTGAGAAACTTGCAGGGCCGTTATTGGCTGACACTTATGTGACTTTATTAAAAGGTCGTAATGCATGGTATGGCCAAATGCTAGCTAAGGGTGAATTAAGCCCAGATATGGGTGACAGCATCAGTGGCAAAGGAATGATTCAGGGTGTCTCTGCAGTGGAGGCCTTCTTTGAACTTTTGAGCCAATCAAGCCTGAATGTGTTGCACCCTGAAGAAAACAAGCCAGTTGCTCCTGTTGAGCTCTGTCCAATCTTGAAGACACTATATAAAATATTGATATCTAGGGAAGAGTCATCACAAGCTATTCTCCAAGCTTTGAGGGATGAAAATCTGAATGATCCCCGTGAGCGCATTGAGATTGCACAAAGCCATGCATTCTACAGGCCTTCACTTCTTGGAAGACCGTGA 1413 0.4268 MGIVSNAYSNGSVQIQNCNGLEEKLDDLRGFLGKADGDPLRIVSVGAGAWGSVFAALLQDTYGQFRDKVQIRIWRRAGRRVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLFADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVVNGLPSTETREIFEEISKYWKERITVPVIISLAKGIEAALEPVPHIITPTKMINQATGVPMENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAVYVFSFLLLSGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGELSPDMGDSISGKGMIQGVSAVEAFFELLSQSSLNVLHPEENKPVAPVELCPILKTLYKILISREESSQAILQALRDENLNDPRERIEIAQSHAFYRPSLLGRP. 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04821 470 Gene3D - 24 103 - -
Seca8g04821 470 Gene3D - 272 442 IPR013328 GO:0016491
Seca8g04821 470 PRINTS NAD-dependent glycerol-3-phosphate dehydrogenase signature 265 289 IPR006168 GO:0006072|GO:0009331|GO:0047952
Seca8g04821 470 PRINTS NAD-dependent glycerol-3-phosphate dehydrogenase signature 44 61 IPR006168 GO:0006072|GO:0009331|GO:0047952
Seca8g04821 470 PANTHER GLYCEROL-3-PHOSPHATE DEHYDROGENASE 38 444 - -
Seca8g04821 470 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 272 437 IPR008927 -
Seca8g04821 470 FunFam Glycerol-3-phosphate dehydrogenase [NAD(+)] 134 268 - -
Seca8g04821 470 Gene3D - 134 268 - -
Seca8g04821 470 Pfam NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 272 436 IPR006109 GO:0005975|GO:0047952
Seca8g04821 470 Pfam NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 144 246 IPR011128 GO:0016616|GO:0046168|GO:0051287
Seca8g04821 470 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 40 272 IPR036291 -
Seca8g04821 470 FunFam Glycerol-3-phosphate dehydrogenase [NAD(+)] 272 442 - -
Seca8g04821 470 FunFam Glycerol-3-phosphate dehydrogenase [NAD(+)] 22 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04821 Seca-Chr8 134056832 134061096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04821 9 470 Acyl Lipid Metabolism Gene Families AT2G41540 87.013 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04821 K00006 - gmx:100797552 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04821 8 134056832 134061096 Seca8g04821 8 134056832 134061096 ECH