Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04776 ATGAAACTCACCAACCTCAACCCCAAACGCATCTTCCGTCGCAAGGACCGCTCTGCAGTCTCCAGGTCCGACCCGTCATCCTTCGGCTCCACCTCGTCGTCCGTATCCTCCGCCGCGAATGGCGGCCGAACCCCCAACAGCGTCCTTCCGGAGGTCCCTAGTGACTTCCGGGGCGAACTGACTCAGGCATTCCGGCTCATTGACAGCGACAACGACGGCATCGTCTCGCTGGCGGAGCTCGAGGCTGTCCTTGCCAGGTTGGCCGGCGCGGCACCACCAGACGGCCGCGACGGAGGAGGGTGCATTAGTGCGGAGGAGATCGTGAACCGGGTCGGGTCGGGTTGTGGAACGGAAGAGCTGAAGGAGGCGTTTGAGGTTTTTGACAAGGACGGTGATGGGAGAATATATGCGGAGGATCTGCTGCGTGTTTTTGCGGCGATGGGCGACGAGCAGTGCACGTTAGAGCAGTGCCGGCGCATGATAGAGGGGGTTGATAGTGACGGGAATGGATTCGTGTGCTTCCAGGACTTCTCGCGTATGATGGGTTGTTCATGA 555 0.6036 MKLTNLNPKRIFRRKDRSAVSRSDPSSFGSTSSSVSSAANGGRTPNSVLPEVPSDFRGELTQAFRLIDSDNDGIVSLAELEAVLARLAGAAPPDGRDGGGCISAEEIVNRVGSGCGTEELKEAFEVFDKDGDGRIYAEDLLRVFAAMGDEQCTLEQCRRMIEGVDSDGNGFVCFQDFSRMMGCS. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04776 184 ProSiteProfiles EF-hand calcium-binding domain profile. 55 90 IPR002048 GO:0005509
Seca8g04776 184 Pfam EF hand 63 83 IPR002048 GO:0005509
Seca8g04776 184 Gene3D - 115 182 - -
Seca8g04776 184 MobiDBLite consensus disorder prediction 22 44 - -
Seca8g04776 184 FunFam calmodulin-like protein 3 113 184 - -
Seca8g04776 184 CDD EFh 59 145 IPR002048 GO:0005509
Seca8g04776 184 Pfam EF-hand domain pair 118 181 IPR002048 GO:0005509
Seca8g04776 184 ProSitePatterns EF-hand calcium-binding domain. 68 80 IPR018247 -
Seca8g04776 184 CDD EFh 119 181 IPR002048 GO:0005509
Seca8g04776 184 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 97 181 - -
Seca8g04776 184 SUPERFAMILY EF-hand 57 181 IPR011992 -
Seca8g04776 184 Gene3D - 11 113 - -
Seca8g04776 184 MobiDBLite consensus disorder prediction 1 53 - -
Seca8g04776 184 SMART efh_1 119 147 IPR002048 GO:0005509
Seca8g04776 184 SMART efh_1 156 184 IPR002048 GO:0005509
Seca8g04776 184 SMART efh_1 59 87 IPR002048 GO:0005509
Seca8g04776 184 ProSiteProfiles EF-hand calcium-binding domain profile. 152 184 IPR002048 GO:0005509
Seca8g04776 184 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
Seca8g04776 184 ProSitePatterns EF-hand calcium-binding domain. 165 177 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04776 Seca-Chr8 133135672 133136226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04776 3 181 EF-hand Containing Proteins AT2G41410 50.495 5.50e-49 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04776 K13448 - fve:101298441 172.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04776 8 133135672 133136226 Seca8g04776 8 133135672 133136226 ECH