Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04692 ATGTGGGCTCTTCGTCGAGCTTCGCTTCGTCCTAGGATCCAAAGACTTAATGTAGGGGCTTCTCTGGCTTCTTGTGTTAAATTAATGCCAACCACCTGTGTGGAAGAGGAGGCTGGTATCCATGAGTCTCATGAAATAAAAAATGGTAGATTTCTGTCAACGAGCACATTTTACCACACGGGTCATGCTCCCCTGAAATTTACTGTGAGCAGGCGGGAACTTTCGTCACAGGCTGATGCTAGTAGCAACAAAGAGGATGATGTGGAAGATGGGTTGTCTGAGGAGGGAGATGACAATGAATCTGAAATAGCCCTGTCAGATGATGATGAGGATAGTGGGGAACCACACAATGAGCTGGAGTTGTCAGAAACTGAGATTGATTCAACGGAGAGCAAAAAAGGTAGAAGGACTCAATCAGAACTGTTCAAGGTGATTTTACAGGCTCCTGGTTTGTCTGTTGGTTCTGCTTTGGATAAGTGGGTTAAAAAAGGGAAAGAACTAAACAGGAAAGAGATCTCATCAGCCTTGAGTAGTCTTCGGAGGCGTAAAATGTATGGGAGGGCTTTGCAGCTCTTCGAGTGGCTAGAGGAAAACAAGCATGAATTTTCTGAGATTGATTATGCTTCTCAACTTGATTTGATTGCCAAATTGCGTGGCCTCCCTAGGGCAGTAAAATACATCGAGAGTGTTCCAGAATCTTTTAGAGGGGAGTTGATGTACCGAACATTACTGGCTAACTATGTTAGTCAGAACAATTTGAAGAAAGCTGAAGAAACATTCAACAAAATGAAGGACTTAAATTTTCCTGTTACAGCATTTGCTTGTAACCAGCTGCTTCTTATTTATAAGAGGGTAGACAAGAAGAAAATAGCCGATGTGTTACTGTTGATGGAAAAAGAGAATGTCAAACCTTCTCTTTTTACTTATCAAATCTTAATAGACACTAAGGGTCTGTCCAATGATATTGCTGGAATGGATCAAATTGTTGAGACTATGAAAGCAGAAGGCATTGAACCACACCATCGAACAAAGGCAGCCTTGGTTAGGCATTACACCTCAGCTGGGCTTAAAGAAAAAGCTGAAGCTATATTAAGGGAGATTGAAGGTGAAAACATGAGAGAGAATCGGTGGGTATGCCCAACTTTGCTTCGCCTTTATGCAAACCTGGGAAAGGCTGATGAAGTGGAGAGGATTTGGAAGGTCTGTTGTGAGACAAAGCCTCGGATTGATGACTATTTGGCTGCAGTTGAAGCTTGGGGAAAGTTAAACAAAATTGAAGAAGCAGAGGCAGCTTTTGAGACGATGTCAAAAAAATGGAAACTTTCTGCCAAGAACTACTCAGTACTCCTGAAGGTTTATATAAATCATAAGATGCTAATGAAGGGTAAGGATCTTGTTAAGCGAATGGCAAATAGTGAGTGCAAAATAGGCCCATTGACCTGGGATGCACTTGTGAAACTTTATGTCCAAGCTGGGGAAGTTGAGAAGGCAGACTCTATTTTGCAGAAGGCAATGGGGCAACAGAAGATGAGGCCATTGTTTGTTACTTATATGGCTATTTTGGAGCAGTACGCAAAGAGGGGCGACATCCATAATTCAGAGAAAATTTTCCAGAGAATGAGAGAAGCTGGTTATACTTCTCGAATCACTCAATTCCAAGTTCTAGTACAGGCCTATGTAAATGCCAAGCTTCCAGCATATGGGATTAGGGAGAGGATGAAAGCTGATAACATATTTCCCAACAGAGCTTTGGCTAACCAGTTGGTTCTAATTGATGCATTTAAGAAAACTGCAGTTTCTGATTTGATTGATTGA 1815 0.4182 MWALRRASLRPRIQRLNVGASLASCVKLMPTTCVEEEAGIHESHEIKNGRFLSTSTFYHTGHAPLKFTVSRRELSSQADASSNKEDDVEDGLSEEGDDNESEIALSDDDEDSGEPHNELELSETEIDSTESKKGRRTQSELFKVILQAPGLSVGSALDKWVKKGKELNRKEISSALSSLRRRKMYGRALQLFEWLEENKHEFSEIDYASQLDLIAKLRGLPRAVKYIESVPESFRGELMYRTLLANYVSQNNLKKAEETFNKMKDLNFPVTAFACNQLLLIYKRVDKKKIADVLLLMEKENVKPSLFTYQILIDTKGLSNDIAGMDQIVETMKAEGIEPHHRTKAALVRHYTSAGLKEKAEAILREIEGENMRENRWVCPTLLRLYANLGKADEVERIWKVCCETKPRIDDYLAAVEAWGKLNKIEEAEAAFETMSKKWKLSAKNYSVLLKVYINHKMLMKGKDLVKRMANSECKIGPLTWDALVKLYVQAGEVEKADSILQKAMGQQKMRPLFVTYMAILEQYAKRGDIHNSEKIFQRMREAGYTSRITQFQVLVQAYVNAKLPAYGIRERMKADNIFPNRALANQLVLIDAFKKTAVSDLID. 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04692 604 Gene3D Tetratricopeptide repeat domain 152 286 IPR011990 GO:0005515
Seca8g04692 604 SUPERFAMILY TPR-like 351 543 IPR011990 GO:0005515
Seca8g04692 604 MobiDBLite consensus disorder prediction 88 116 - -
Seca8g04692 604 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 236 412 - -
Seca8g04692 604 Pfam Pentatricopeptide repeat domain 263 315 IPR002885 -
Seca8g04692 604 Pfam Pentatricopeptide repeat domain 505 561 IPR002885 -
Seca8g04692 604 Pfam PPR repeat 480 503 IPR002885 -
Seca8g04692 604 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 413 598 - -
Seca8g04692 604 PANTHER OS12G0527900 PROTEIN 75 581 - -
Seca8g04692 604 NCBIfam pentatricopeptide repeat 239 270 IPR002885 -
Seca8g04692 604 NCBIfam pentatricopeptide repeat 515 545 IPR002885 -
Seca8g04692 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 512 IPR002885 -
Seca8g04692 604 MobiDBLite consensus disorder prediction 117 134 - -
Seca8g04692 604 MobiDBLite consensus disorder prediction 74 134 - -
Seca8g04692 604 Gene3D Tetratricopeptide repeat domain 415 601 IPR011990 GO:0005515
Seca8g04692 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Seca8g04692 604 Gene3D Tetratricopeptide repeat domain 287 414 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04692 Seca-Chr8 131330256 131335516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04692 145 544 EF-hand Containing Proteins AT1G02150 26.087 2.13e-43 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04692 - - gmx:100805354 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04692 8 131330256 131335516 Seca8g04692 8 131330256 131335516 ECH