Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca8g03640 | ATGGGCCAGGCAGCTTCCACGGCCTCCGTCGCTAGCCGCCGCGAAAGCGCCCAAGGCCACCGCGCCGCCAACACCTCAAAGACCAGATCCACCGCCTTGGTTTCTCCGATGCTCTCTGGTGAAGAAGATGACGACAACCAACGTCGTGGTGAGGCGGTTATCCATGACTACATCTCCGATCTCCCCGACGAGTGTTTGGCTACGGTGTTCCAGTCGCTTAGCTCCGCCGATCGCAACCGCTGTTCGCTTGTTTGCCGGCGGTGGCTCCAGGTCGAGGGACAGAGCCGTCACCGTCTCTCACTCAACGCGCAAGCGGATCTCCTTCCGGTAATTCCTTCTCTCTTTTCTCGATTCGATTCGGTGACAAAACTAGCGCTCAAATGCGACCGTAGATCCGTGAGTATCAGGGACGATGCGCTCGTCCTCATCTCTCAGCGGTGCCCTAACCTCACGCGCCTAAAGCTCCGCGCGTGTCGCGAGCTCACCGACGCCGGAATGGAAGCCTTTGCCAAGAACTGCAAGGGTTTGAAGAAGCTCTCGTGCGGATCTTGCACATTCGGTTCCAAAGGGATGAACGCGGTGCTCGATAATTGTGCCGCACTTGAAGAGCTCTCTGTCAAGCGCCTCCGCGGAATCACTGATGCCGCGGCGGCGGAACCGATTGGGCCTGGCGTAGCGGCGGCGTCACTCAAAACCATTTGTTTGAAGGAACTTTACAATGGACAGTGTTTTGGTTCGTTGATTCTCGGCGCCAAGAATCTGAAGACGTTAAAGCTTTTCCGATGCTCCGGTGATTGGGATAAGCTCTTTCAACTAGTGGCAGATCGAGTAACAAGCATGGTTGAGGTTCACCTCGAGAGGCTCCAGATTAGCGACGTTGGCTTGCAGGCTATTGCCAATTATTCGAGCTTAGAAATTTTGCATCTGGTTAAGACTCCAGAGTGCACGGATTTGGGACTTGTTGCAATTGCAGAGCGATGCAAACTCTTGAGGAAGCTTCACGTTGATGGGTGGAAGGCAAATCGTATTGGTGATGAAGGGTTAATAGCGGTTGCTAAGTACTGCCCTAATCTACAGGAACTAGTTCTTATTGGAGTTAACCCTACTAAAGCCAGTTTGGAAATGTTAGCATCTAATTGCCAGAATCTAGAGCGGTTGGCTTTGTGTGGAAGTGATACGGTTGGTGATCCTGAGATATCTTGCATTGCAGCTAAGTGTGTAGCTTTAAAGAAACTCTGCATTAAGAGTTGCCCTGTTTCTGATCATGGGATGGAAGCACTGGCTAGTGGGTGCCCCAATTTGGTAAAAGTGAAAGTTAAGAAGTGTAAGGGTGTCACCTCTGAGGGTGGGGATTGGTTGAGGCTTACTAGGGGGTCAATTTCTGTTAACTTAGATACAGGCGAAGCAGAACATCCAGATGCAAGTGCCAGTGATGGTGGAGCACAAGACAATGGGATAGAATTTCCTCCGATGCCTGGCCAAACAGCCGCAACTGCATCAGCCAGTATTGCATCAAGTAGTACTGGTCGATCTAGTTCATTCAAGTCAAGGTTAGGACTTTTGTCTGGGAGGAGTTTAGTGGCTAGCACTTGGAGAAAATGGTCAGGTGGTAGCACTAGTGCCCGCCATGGTTAG | 1635 | 0.5156 | MGQAASTASVASRRESAQGHRAANTSKTRSTALVSPMLSGEEDDDNQRRGEAVIHDYISDLPDECLATVFQSLSSADRNRCSLVCRRWLQVEGQSRHRLSLNAQADLLPVIPSLFSRFDSVTKLALKCDRRSVSIRDDALVLISQRCPNLTRLKLRACRELTDAGMEAFAKNCKGLKKLSCGSCTFGSKGMNAVLDNCAALEELSVKRLRGITDAAAAEPIGPGVAAASLKTICLKELYNGQCFGSLILGAKNLKTLKLFRCSGDWDKLFQLVADRVTSMVEVHLERLQISDVGLQAIANYSSLEILHLVKTPECTDLGLVAIAERCKLLRKLHVDGWKANRIGDEGLIAVAKYCPNLQELVLIGVNPTKASLEMLASNCQNLERLALCGSDTVGDPEISCIAAKCVALKKLCIKSCPVSDHGMEALASGCPNLVKVKVKKCKGVTSEGGDWLRLTRGSISVNLDTGEAEHPDASASDGGAQDNGIEFPPMPGQTAATASASIASSSTGRSSSFKSRLGLLSGRSLVASTWRKWSGGSTSARHG. | 545 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca8g03640 | 544 | FunFam | F-box protein SKIP2 | 93 | 474 | - | - | |
| Seca8g03640 | 544 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
| Seca8g03640 | 544 | Gene3D | Ribonuclease Inhibitor | 222 | 479 | IPR032675 | - | |
| Seca8g03640 | 544 | SMART | fbox_2 | 61 | 101 | IPR001810 | GO:0005515 | |
| Seca8g03640 | 544 | Gene3D | Ribonuclease Inhibitor | 103 | 221 | IPR032675 | - | |
| Seca8g03640 | 544 | ProSiteProfiles | F-box domain profile. | 55 | 91 | IPR001810 | GO:0005515 | |
| Seca8g03640 | 544 | FunFam | F-box/LRR-repeat protein 3 isoform X1 | 57 | 97 | - | - | |
| Seca8g03640 | 544 | PANTHER | UNCHARACTERIZED | 59 | 465 | - | - | |
| Seca8g03640 | 544 | SUPERFAMILY | RNI-like | 108 | 454 | - | - | |
| Seca8g03640 | 544 | CDD | F-box_AtTIR1-like | 58 | 96 | - | - | |
| Seca8g03640 | 544 | SMART | LRR_CC_2 | 198 | 224 | IPR006553 | - | |
| Seca8g03640 | 544 | SMART | LRR_CC_2 | 380 | 405 | IPR006553 | - | |
| Seca8g03640 | 544 | SMART | LRR_CC_2 | 302 | 326 | IPR006553 | - | |
| Seca8g03640 | 544 | SMART | LRR_CC_2 | 173 | 197 | IPR006553 | - | |
| Seca8g03640 | 544 | SMART | LRR_CC_2 | 147 | 172 | IPR006553 | - | |
| Seca8g03640 | 544 | SMART | LRR_CC_2 | 277 | 301 | IPR006553 | - | |
| Seca8g03640 | 544 | SMART | LRR_CC_2 | 431 | 458 | IPR006553 | - | |
| Seca8g03640 | 544 | SMART | LRR_CC_2 | 406 | 430 | IPR006553 | - | |
| Seca8g03640 | 544 | SMART | LRR_CC_2 | 327 | 354 | IPR006553 | - | |
| Seca8g03640 | 544 | SMART | LRR_CC_2 | 355 | 379 | IPR006553 | - | |
| Seca8g03640 | 544 | MobiDBLite | consensus disorder prediction | 495 | 516 | - | - | |
| Seca8g03640 | 544 | SUPERFAMILY | F-box domain | 44 | 91 | IPR036047 | GO:0005515 | |
| Seca8g03640 | 544 | Gene3D | - | 57 | 96 | - | - | |
| Seca8g03640 | 544 | Pfam | Leucine Rich repeat | 279 | 299 | IPR001611 | GO:0005515 | |
| Seca8g03640 | 544 | Pfam | Leucine Rich repeat | 147 | 170 | IPR001611 | GO:0005515 | |
| Seca8g03640 | 544 | MobiDBLite | consensus disorder prediction | 465 | 516 | - | - | |
| Seca8g03640 | 544 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Seca8g03640 | 544 | Pfam | F-box domain | 58 | 90 | IPR001810 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca8g03640 | Seca-Chr8 | 104949152 | 104950786 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca8g03640 | - | - | gmx:100788163 | 889.797 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Seca8g03640 | 8 | 104949152 | 104950786 | Seca8g03640 | 8 | 104949152 | 104950786 | ECH |