Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03367 ATGAAGCTTTGGTGCCTTCTTCTATGCTTCAACGAAGAAGGAGGAGAAGAAGAAGACGAGGAGGAGGTGGTGGTTGTAGAAGAGGAAGAACATAATCTTCCCAAGCCTATGAAGGAGGAGGGCATTTTTGGAAACGACGACATCTTTTTTTCTGCCATGACTGATGACAACGCCGATGTTGAAAATGATGAGCATCCTCCACCAGTTACTGCTGTTAGCCACGACGACCACATGTTTGACGAAATGGCGAGGGTTGTAACTGTGCGGCGGTCTGAGGGAGGAGAAAGTAGCTCCGCCGTTTCAGCAGTGGCTGCCACTTCTGAGAGTGCCGCCGCTGAGGAGAGTTGGGATTCGAGCCACAAGCGTGCCAAGTTCTACACTGATTTCGATGAGTGTCACTTTGCAGCCCCAACATCTTCGACAACTGGGAAATACAATGCATCTGCTGACTATGGGAATTACAATTATATTCAAGGCTCATCTCTTCAACCTAACAATAGCACGTCTTATGATGCGTTTTCATTGATGTGTACTGGTGAGGAGAGTCACTTTGATTCTAGCGGTGTGGAAGACGGTGAAGGAAATGATAGTGACATCTCAAAAGTAGAAGATCTAGAAGTCAGGATGGATCTCACGGATGACTTGTTGCATATGGTTTTCTCATTTTTGGATCATCCCAATCTCTGTAAAGCTGCCGGAGTTTGTAAGCAGTGGCGAGCTGCTAGTGCTCATGAAGATTTCTGGAGGAGTTTGAATTTTGAAGATCGGAACATATCTTTAGAACAATTTGAGGACATGTGTCGGCGTTATCCTAATGCTACAGCAATGAGCATATCGGGTCCTGCTATTTACTTGTTTGTCATGAAGGCCATCTCTTCATTAAGGAATCTTGAGGTTTTAACATTAGGAAGAGGACAGATAGCGGATACTTTTTTTCTTGCTTTACCTGACTGTTCTATGTTGAAAAAATTGAATATCAATGATGCTACACTTGGCAATGGCATTCAGGAGATATCTGTTATTCATGAAAGATTGTGTCATCTTCAATTAACAAAATGCCGTGTGATGCGAATAGCTGTCAGGTGCCCACAGCTTGAAACTATGTCATTGAAGCGCAGTAACATGGCACAGGTTGTGCTTAATTGTCCTCTTTTGCATGAGCTTGATATAGGCTCATGCCACAAACTTCCTGATGCTGCGATCCGTGCTGCTGCAACTTCATGCCCTCAACTAGTATGGCTGGACATGTCTAATTGTTCATGTGTCAGCGATGAAACGTTGCGTGAAATAGCACAGAATTGTGCTAACCTCAGTTATCTTGATGCATCATACTGCCCAAACATATCTTTGGAGTCTGTTAGACTTACAATGTTGACAGTTCTAAAGCTTCATAGTTGTGAGGGTATCACTTCTGCCTCAATGGCTGCAATAGCTCATAGTACTATGTTGGAGGTTTTGGAGCTTGACAATTGCAGTCTATTGGCTTCAGTGTCTTTGGATCTTCCGTGTTTGCAGAATATTAGATTGGTACACTGCCGCAAATTTGCTGATTTGAACTTGAGGGCTATAATGCTTTCTTCTATACTGGTGTCTAACTGCCCTGCACTACACCGTATCAACATCACTTCCAATTCACTTCAAAAATTAGCATTGCAAAAGCAGGACAGCTTAACCACATTAGCTCTGCAATGCCAATCTTTACAAGAAGTGGACCTCTCTGAGTGTGAATCTTTGACAAACTCTATATGTGATGTGTTTAGTGATGGTGGAGGATGCCCTATGTTGAAATCATTAGTTCTTGATAATTGTGAGAGCTTGACATCAGTTCGGTTCATCAGCACCTCTTTAGTCAGCCTTTCCCTTGGTGGTTGCCGGGCAATTACTACTCTTGAGCTAACATGCCCTAATCTTGAGAAAGTCATTTTGGATGGTTGTGATCATTTGGAAAGAGCATCGTTTAGTCCTGTTGGTCTTCGGTCTCTCAATTTAGGAATATGTCCAAAATTGAACATACTTAGCATTGAAGCGATGTTTATGGTCTCACTGGAGTTGAAAGGATGCGGCGTACTATCTGAAGCATCCCTTAATTGTCCTCTCTTGACATCATTGGATGCTTCCTTTTGCAGCCAACTCACTGATGACTGCTTGTCTGCAACAACTTCCTCATGCCCACTGATTGAGTCGTTAATTTTGATGTCATGCCCATCGATTGGTTTAGATGGACTTTGTTCTCTGCGTTGGCTCCCGAATTTGACTCTGCTTGATTTATCATACACTTTCCTGGTGAATCTGCAGCCTGTTTTTGAGTCTTGTTCACAGCTAAAGGTATTAAAGTTGCAGGCATGCAAATATCTCACTGACTCATCACTTGAACCTCTATACAAGGGGGGAGCTTTACCAGCCCTTCAGGAGTTGGACTTGTCTTATGGAACTCTCTGTCAGTCTGCCATAGAAGAGCTTCTTTCTTGCTGCACACACCTTACTCGTGTGAGCTTGAATGGCTGTGTGAATATGCATGATTTAAACTGGGGTCACAGTCGGGAGCATATTCCTGAGTTGCCTGGCATAAATGTCCTATCCATTGCAAGTTCCCATGAGAACTTCCAAGAGTCAAGTGAGCAACCCACCCGATTGCTGCAGAATCTCAACTGTGTGGGATGTCCAAATATTAGGAAGGTTTTCATTCCATCAACAGCATATTGTTCCCATTTATTGTTTTTAAATCTTTCTCTGTCAGCTAATTTGAAGGAAGTTGATGTAGCTTGTCTCAACCTATGCTGGCTTAATTTAAGCAATTGTTCCTCTTTGGAAGTTTTGAAGCTAGACTGTCCAAGATTGACCAGTCTGTTCCTTCAGGTTATTATTCTTCCCTGCTAA 2877 0.4296 MKLWCLLLCFNEEGGEEEDEEEVVVVEEEEHNLPKPMKEEGIFGNDDIFFSAMTDDNADVENDEHPPPVTAVSHDDHMFDEMARVVTVRRSEGGESSSAVSAVAATSESAAAEESWDSSHKRAKFYTDFDECHFAAPTSSTTGKYNASADYGNYNYIQGSSLQPNNSTSYDAFSLMCTGEESHFDSSGVEDGEGNDSDISKVEDLEVRMDLTDDLLHMVFSFLDHPNLCKAAGVCKQWRAASAHEDFWRSLNFEDRNISLEQFEDMCRRYPNATAMSISGPAIYLFVMKAISSLRNLEVLTLGRGQIADTFFLALPDCSMLKKLNINDATLGNGIQEISVIHERLCHLQLTKCRVMRIAVRCPQLETMSLKRSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVWLDMSNCSCVSDETLREIAQNCANLSYLDASYCPNISLESVRLTMLTVLKLHSCEGITSASMAAIAHSTMLEVLELDNCSLLASVSLDLPCLQNIRLVHCRKFADLNLRAIMLSSILVSNCPALHRINITSNSLQKLALQKQDSLTTLALQCQSLQEVDLSECESLTNSICDVFSDGGGCPMLKSLVLDNCESLTSVRFISTSLVSLSLGGCRAITTLELTCPNLEKVILDGCDHLERASFSPVGLRSLNLGICPKLNILSIEAMFMVSLELKGCGVLSEASLNCPLLTSLDASFCSQLTDDCLSATTSSCPLIESLILMSCPSIGLDGLCSLRWLPNLTLLDLSYTFLVNLQPVFESCSQLKVLKLQACKYLTDSSLEPLYKGGALPALQELDLSYGTLCQSAIEELLSCCTHLTRVSLNGCVNMHDLNWGHSREHIPELPGINVLSIASSHENFQESSEQPTRLLQNLNCVGCPNIRKVFIPSTAYCSHLLFLNLSLSANLKEVDVACLNLCWLNLSNCSSLEVLKLDCPRLTSLFLQVIILPC. 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03367 958 SMART LRR_CC_2 455 480 IPR006553 -
Seca8g03367 958 SMART LRR_CC_2 408 433 IPR006553 -
Seca8g03367 958 SMART LRR_CC_2 634 664 IPR006553 -
Seca8g03367 958 SMART LRR_CC_2 771 796 IPR006553 -
Seca8g03367 958 SMART LRR_CC_2 592 622 IPR006553 -
Seca8g03367 958 SMART LRR_CC_2 723 748 IPR006553 -
Seca8g03367 958 SMART LRR_CC_2 434 454 IPR006553 -
Seca8g03367 958 SMART LRR_CC_2 697 722 IPR006553 -
Seca8g03367 958 SMART LRR_CC_2 564 588 IPR006553 -
Seca8g03367 958 SMART LRR_CC_2 382 407 IPR006553 -
Seca8g03367 958 SMART LRR_CC_2 824 864 IPR006553 -
Seca8g03367 958 SUPERFAMILY F-box domain 210 241 IPR036047 GO:0005515
Seca8g03367 958 FunFam F-box/LRR-repeat protein 15 764 849 - -
Seca8g03367 958 Gene3D Ribonuclease Inhibitor 454 671 IPR032675 -
Seca8g03367 958 SUPERFAMILY RNI-like 657 952 - -
Seca8g03367 958 CDD F-box_FBXO41 213 252 - -
Seca8g03367 958 Gene3D Ribonuclease Inhibitor 765 956 IPR032675 -
Seca8g03367 958 Gene3D Ribonuclease Inhibitor 205 453 IPR032675 -
Seca8g03367 958 SUPERFAMILY RNI-like 455 675 - -
Seca8g03367 958 PANTHER OS10G0396666 PROTEIN 191 949 - -
Seca8g03367 958 FunFam F-box/LRR-repeat protein 15 530 656 - -
Seca8g03367 958 Pfam F-box-like 213 253 IPR001810 GO:0005515
Seca8g03367 958 Gene3D Ribonuclease Inhibitor 672 764 IPR032675 -
Seca8g03367 958 FunFam F-box/LRR-repeat protein 15 669 763 - -
Seca8g03367 958 FunFam F-box/LRR-repeat protein 15 203 452 - -
Seca8g03367 958 SUPERFAMILY RNI-like 235 493 - -
Seca8g03367 958 ProSiteProfiles F-box domain profile. 205 251 IPR001810 GO:0005515
Seca8g03367 958 SMART fbox_2 211 251 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03367 Seca-Chr8 96896436 96903782 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03367 - - gmx:100782842 1489.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03367 8 96896436 96903782 Seca8g03367 8 96896436 96903782 ECH