Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03361 ATGGGTGAGGCTCCACAACTGTTCTTCCTTAATGGTTTCTCAAAGTTTGGCCATGAAACTCAACAAAACCATAGCAGCAACGATGAGAACCATGATTCCTCCTCCTGGTACGAGGAAGTTATCGATGATGATCTCAAATGGTCTTTCAAACTCAACAGAGTGCTCCATAAAACGATTAGCGAGTACCAGGACATAGCTCTCTTAGACACAAAGCGTTTTGGAAAGGCTTTGGTGCTTGATGGGAAGATGCAGAGTGCTGAAACGGATGAATTCATTTATCATGAATGCTTGATCCATCCCCCTCTTTTATGTCATCCCAACCCCAAGAAGGTGTTTATAATGGGAGGTGGTGAAGGTTCTGCTGCTAGGGAAGCTCTCAAGCACAAGTCAATGGACAGAGTGGTCATGTGCGATATAGACAAGGAGGTGGTAGATTTCTGCCGAAAATACCTGACTGCAAACAGGGAGGCATTTTCTAATAAGAAGCTTGACCTTGTCATCAATGATGCCAAGGCTGAATTGGAAAAGAGAAAGGAGAAGTTTGATGTCATTGTTGGAGATTTGGCAGACCCACTTGAAGATGGGCCTTGCTATCAACTCTACACTAAATCCTTCTATGAGAAAGTGGTGAAGCCCAAGCTTAATGACAATGGCATATTTGTGACCCAGGCTGGACCAGCAGGTATTTTCACACACAAGGAGGTTTTCACTTCTATATATAACACAATCAAACAGGTCTTCAAATATGTGATAGCATACACAACTCATATACCATCATTTGCTGATACATGGGGATGGGTTATGGCTTCAGACCAACCACTATCAATTGGTGCTGAGGAAATGGACAAAAGGATCCAAACAAGAATAGATGGGGAACTGCTCTATCTAAATGGTGCTTGGTTCCATTCATCTACCATCATGAATAAGACTGTTTCCCAATCGTAA 945 0.4265 MGEAPQLFFLNGFSKFGHETQQNHSSNDENHDSSSWYEEVIDDDLKWSFKLNRVLHKTISEYQDIALLDTKRFGKALVLDGKMQSAETDEFIYHECLIHPPLLCHPNPKKVFIMGGGEGSAAREALKHKSMDRVVMCDIDKEVVDFCRKYLTANREAFSNKKLDLVINDAKAELEKRKEKFDVIVGDLADPLEDGPCYQLYTKSFYEKVVKPKLNDNGIFVTQAGPAGIFTHKEVFTSIYNTIKQVFKYVIAYTTHIPSFADTWGWVMASDQPLSIGAEEMDKRIQTRIDGELLYLNGAWFHSSTIMNKTVSQS. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03361 314 Gene3D Vaccinia Virus protein VP39 87 314 IPR029063 -
Seca8g03361 314 Pfam Spermidine synthase tetramerisation domain 36 87 IPR035246 -
Seca8g03361 314 NCBIfam fused MFS/spermidine synthase 107 259 - -
Seca8g03361 314 FunFam Polyamine aminopropyltransferase 87 314 - -
Seca8g03361 314 Coils Coil 160 180 - -
Seca8g03361 314 Gene3D Spermidine synthase, tetramerisation domain 34 86 IPR037163 -
Seca8g03361 314 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 35 311 IPR029063 -
Seca8g03361 314 Pfam Spermine/spermidine synthase domain 90 268 - -
Seca8g03361 314 Hamap Polyamine aminopropyltransferase [speE]. 35 312 IPR001045 GO:0003824
Seca8g03361 314 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 34 271 IPR030374 -
Seca8g03361 314 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 23 313 - -
Seca8g03361 314 CDD AdoMet_MTases 115 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03361 Seca-Chr8 96539485 96544357 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03361 K18787 - gmx:100784972 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03361 8 96539485 96544357 Seca8g03361 8 96539485 96544357 ECH