LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g03316	ATGTCTTGGGCTGACATGGCTCAAGAAGATGATGAGTTTGGTGAAGAAGAGCATGAGCATAGCAACAACAATGCTGATGTAGTTGTGGCTGATTCAAATCCTTCTGAAGCAACTAAGAAGCCTACTTTGTCAAGGGAGCAGAGGGAGCACATTAGGTTCATGAACGTGAGGCGTAAAAAAGACTTCATATGCTTTGAGAGGGTTAATGGAAAACTTGTTAACATTCTTGAAGGACTTGAACTCCACACTGGTATTATTAGTGCTGCTGAACAGAGAAGGATAGTCAGTTATGTTGCTTCCCTTCAGGAGATGGGGAGAAACGGAGAATTGAAAGATCGGACATTTTCAGCTCCGCAAAAGTGGATGAGGGGCAAGGGACGTCAAACTATCCAATTTGGGTGCTGTTACAATTATGCAGTGGATAGAGATGGTAACCCACCCGGTATTCTTAAGAATGCAATGGTAGATCCTATACCTCATCTTTTCAAGGTCATCATTCGACGCCTTATAAGGTGGCATGTTCTCCCTCCTACTTGTGTTCCAGATAGCTGCATCGTGAATATCTATGAAGAAGGGGACTGTATACCTCCACATATAGATAACCATGATTTTGTTCGACCATTTTGCACTGTCTCATTTCTTAGTGAGTGCAATATACTTTTTGGATCAAACTTGAAGATTGTAGGTCCTGGTGAATTTGATGGTTCATTTGCTATTCCCCTACCTGTGGGATCTGTACTTGTCTTAAATGGAAATGGAGCTGATGTAGCCAAGCACTGTGTACCTGCAGTTCCTACAAAAAGGATATCAATCACATTTAGAAGAATGGATGCATCCAAACGGCCATTTGGGTATGTTCCTGAACCTGATCTTCAGGGGATCCAACCATTGGTCTATGAAAATGAACAGGAAAAGAAGGCAAGTGGTGGACACAGACCTAATAATCGTCATATGAAGAGACATAAAGACAGGAGAGGGGGCAGGAATGGTGCAACTAAAAGTGATAGATACTCAGAGCCTCGTGAGTCACCTCAAAGTTCACAAAGATCTGCAAATAGGTGGAATAGGGTAAGGCATAGTGGTTGA	1086	0.4254	MSWADMAQEDDEFGEEEHEHSNNNADVVVADSNPSEATKKPTLSREQREHIRFMNVRRKKDFICFERVNGKLVNILEGLELHTGIISAAEQRRIVSYVASLQEMGRNGELKDRTFSAPQKWMRGKGRQTIQFGCCYNYAVDRDGNPPGILKNAMVDPIPHLFKVIIRRLIRWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNILFGSNLKIVGPGEFDGSFAIPLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRRMDASKRPFGYVPEPDLQGIQPLVYENEQEKKASGGHRPNNRHMKRHKDRRGGRNGATKSDRYSEPRESPQSSQRSANRWNRVRHSG.	362

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g03316	361	MobiDBLite	consensus disorder prediction	25	40	-	-
	Seca8g03316	361	PANTHER	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED	1	346	IPR044842	GO:0003729\|GO:0006402\|GO:0032451
	Seca8g03316	361	SUPERFAMILY	Clavaminate synthase-like	75	276	-	-
	Seca8g03316	361	ProSiteProfiles	Fe(2+) 2-oxoglutarate dioxygenase domain profile.	180	277	IPR005123	-
	Seca8g03316	361	MobiDBLite	consensus disorder prediction	303	361	-	-
	Seca8g03316	361	Pfam	2OG-Fe(II) oxygenase superfamily	79	274	IPR027450	-
	Seca8g03316	361	Gene3D	-	63	281	IPR037151	-
	Seca8g03316	361	MobiDBLite	consensus disorder prediction	328	342	-	-
	Seca8g03316	361	MobiDBLite	consensus disorder prediction	312	327	-	-
	Seca8g03316	361	MobiDBLite	consensus disorder prediction	1	46	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g03316	Seca-Chr8	95042764	95046688	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g03316	K10767		-	gmx:100797674	587.8