Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03313 TTTAAGATTTTAGTAACCCACCCGTGTGTGGCGTGTGTGCGCCTTGTCATATGGCAGTGTCAAGTGTCAACCATCCAACCCCAACAAAAAAAGAGATCCCCAGGAAGCTTCCTCCCTCTTGAGCTCGCTTTCCCTTTTTCACTTTTAGGATTTCATGCTCCAAAGCTCATTTTAAACACACAATCCAATCCCAGTTCTGTTGTCCACTTGTTCTATTCTCACCGTGTGCTTTGTTTTTCCTATCCACTCAACAAAGCAGCAGCAGCAGCTTCAGTTTTTCAGTTGTTTTCTCCAAAATTCTGGTCAATGGAACGGAGTTTGAAAAGAAAGGCACCAGAAAATGGGGACAATGCTCTCTTCAACAGCTTTTCTCTGGATGACCTTAATGAAGATCTCTTCGAAAGGGTGCTTTCATGGCTACCAACTTCCGCTTTCTTCCGCCTTACTTCTGTGTGCAAAAGATGGAAGTCAGCTGCTGCTTCTGTGAGCTTCAAGCACGCCTGCTCACATGTTCCTTCGCGGGATCCTTGGTTTTTGATGGTTGCTCCCAACCTCAACCAATCTATTATCTTTGACTCTGCTGAAAACAGTTGGAAGAGACTCAACCATCCGCGCCTTCTGCATGATGATTCTAACAGATGTTGCATGCCTGTTGCTGCCTCTGGTGGCCTGGTTTGCTACCGCACATTGTCAGGAAACTTCATTGTCTGCAATCCTGTGATCGGATCTTGTAGTGAACTCCCTCCATTGCATTTTGCCTCAGAAAACCAATCTCTCAATGCCATTGTGATGAGTACAGCCTTCAAAGACCAAATCTCCTACAAGATTGTATTAGTCTTTGGTGAACTCCCAAATCTTTTGTTTAAAGTCTACAACTCAAGCTCTGGCTGTTGGGAAGATGAGATTGCTCTTAGGAGGAAGGTTGATGATAATTCCATGGATTGTGATTCAACTGATGGCAATGTTGTGTACTTCCTTAGCAAGGCTGGGAATGTGGTGGCAAGTAGCATGCAGAGAAGCCCATCTAAGCAATATTCATCAGTTATTACTAACAAAGATGGTCAAGAGATAGTCTATTTTCTCAGTTCCTCAGGGACAGTTGTAGCTTGCAATTTGACATGCAAGTGCTTCATTGAGTACCCCAGGTTGTTGCCTCTTTTCACTGAGTACTCTATTGATGTTGTGGAGTGTGATGGGGAGCTGTTAGTTGTTTTGCTATCAGAATTCTTTGAAAGCACAAGTCTGAGGGTGTGGAAATATGATGAGGCGAATCGATGCTGGCAGCAGATTGCAGCAATGCCTGCAGCAATGTCTCATGAGTGGTATGGGAAGAAGGCAGATATTAACTGTGTTGGAGCTGGTGATCGGATATTCATATGCTTGAACTCCCCTGAGATATGTACTTACATCATGTGTGATTTGGCGACCAACAAATGGGTTGAATTGCCAAAATGTTGCATGAATGGGGAAGTCATAGAGTTCACGTCTGCGTTTTCATTTGAGCCCAGGATAGAGGCTTCTGTATCTTGA 1530 0.4412 FKILVTHPCVACVRLVIWQCQVSTIQPQQKKRSPGSFLPLELAFPFSLLGFHAPKLILNTQSNPSSVVHLFYSHRVLCFSYPLNKAAAAASVFQLFSPKFWSMERSLKRKAPENGDNALFNSFSLDDLNEDLFERVLSWLPTSAFFRLTSVCKRWKSAAASVSFKHACSHVPSRDPWFLMVAPNLNQSIIFDSAENSWKRLNHPRLLHDDSNRCCMPVAASGGLVCYRTLSGNFIVCNPVIGSCSELPPLHFASENQSLNAIVMSTAFKDQISYKIVLVFGELPNLLFKVYNSSSGCWEDEIALRRKVDDNSMDCDSTDGNVVYFLSKAGNVVASSMQRSPSKQYSSVITNKDGQEIVYFLSSSGTVVACNLTCKCFIEYPRLLPLFTEYSIDVVECDGELLVVLLSEFFESTSLRVWKYDEANRCWQQIAAMPAAMSHEWYGKKADINCVGAGDRIFICLNSPEICTYIMCDLATNKWVELPKCCMNGEVIEFTSAFSFEPRIEASVS. 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03313 509 SUPERFAMILY F-box domain 120 180 IPR036047 GO:0005515
Seca8g03313 509 Pfam F-box domain 125 165 IPR001810 GO:0005515
Seca8g03313 509 CDD F-box_AtFBW1-like 126 164 - -
Seca8g03313 509 SMART fbox_2 128 168 IPR001810 GO:0005515
Seca8g03313 509 SUPERFAMILY Galactose oxidase, central domain 176 436 IPR011043 -
Seca8g03313 509 PANTHER BNACNNG10540D PROTEIN 354 507 - -
Seca8g03313 509 Gene3D - 119 166 - -
Seca8g03313 509 ProSiteProfiles F-box domain profile. 122 167 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03313 Seca-Chr8 94852809 94855117 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03313 - - gmx:100801096 725.317