Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03312 ATGTTTTGTCCTTTTCAGGTTCTTTTTCCTTACAATGAATTTGTTAAATTGTTTAACTGGGACAAGCCTGGATTTCCTCCTTGTGGACTCTTGAATTGTGGAAACAGTTGCTTTGCAAATGTGGTTCTTCAGTGTCTCTCATTCACACGGCCACTTGTTGCCTACTTGTTGGAGAAGGGCCACCGAAGAGAATGCAGTTGTAATGATTGGTGTTTTCTATGTGAATTTGAAAATCATGTTGAAAGAACAAGGCTAAGTTCACAGGCATTTTCTCCAATGAATATTCTCTCTCGTTTACCTAATATTGGTGGTACTCTAGGTTATGGAAGACAAGAGGATGCTCATGAGTTCATGAGGTTTTCAATTGATACTATGCAATCTGTTTGCCTTGATGAATTTGGTGGAGAAAAAGTTGTCCCTCCTAACCTTCAGGAGACAACCCTAATTCAACATATTTTTGGTGGCCGCCTTCAATCTGAGGTGAGTTGCACAAAATGTGATAAGATTTCAAATCAGTATGAAAATATGATGGACTTGACAGTTGAAATTCATGGAGATGCTGCCTCGTTGGAGGAATGTCTAGACCAGTTTACTGCCAGGGAGTGGCTTGATGGGGAAAATATGTATAAATGTGAGGGGTGCAAGGACTATGTCAAGGCATGGAAACGTCTTACAGTGAAATCTGCTCCAAATATTCTTACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTTAACAAGAGAATAGCCTTCCCTGAGACTTTAAATCTTAGTCCTTACATGAGTGAAGCTGGAGATGGATCCGATATCTATAAGTTATATGCTGTTGTAGTCCATATTGATATGCTAAATGCTTCATTTTTTGGTCACTACATCTGCTACATCAAGGATTTCCAGGGAAACTGGTATAGGGTTGATGACTCGAAGGTTATGAGTGTGGAATTGGAGGATGTACTTTCTCAGGGAGCATACATGCTGTTGTATAGCAGGTGTAGTTCCCGTCCATCAGGTCCTCAAATTCAAAGTACTGAATCTTCAGGGACATCAGAAGAAGTGCAAACAGTGGAAGCAGAGCCTGGTCAAACTGAACAAGCTGAATGCCTCTCAGATATGAAGACTTTGACTTGCAGTAGAGGTTGTGAAGTTTTGCCATCTGATATTAGTTCAGAAGTGAAGGTTTCTTCTGGCTATGAATATGAGTCCACTGGATTGAACTTAGAAGCCAAAAAAGGGCAGTCTGAGGATATGGACATAATTGATGTTGAGTCAACTGATATGTCTATTTCTCAAGCTGCCAAAGATTTGGCAGATGTAGATATTGGAAAACCTTTAGAAGAGACTGTGGGCTGCATACAAGAGCAAGATGATACTAATAAGGCTAGGTCTGGTTCTTCTCTGGGTTTACCAGATGACTTTTCTCCCTTGGATAAGCTTTCTTCTGTTTCAACGGATTATCAAAATGGAGAAGATTCAGAACATATGGATGTGGTTAAATGCAAGTTGTTAACAGCCAAAGATAATACATATTATGGGAATGGATATGTTAGTGCAAACAAATCCGCTATTCCACATGATGATACTGGTACACTATTTTCTGCTGTTGGTTCTTCTCCCACTGAAAATGCCAACGGAAATGGGGTTAAGAAAGTGGAATTATCAGCAGACAAATCATAA 1683 0.3975 MFCPFQVLFPYNEFVKLFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLVAYLLEKGHRRECSCNDWCFLCEFENHVERTRLSSQAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDTMQSVCLDEFGGEKVVPPNLQETTLIQHIFGGRLQSEVSCTKCDKISNQYENMMDLTVEIHGDAASLEECLDQFTAREWLDGENMYKCEGCKDYVKAWKRLTVKSAPNILTIALKRFQSGRFGKLNKRIAFPETLNLSPYMSEAGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFQGNWYRVDDSKVMSVELEDVLSQGAYMLLYSRCSSRPSGPQIQSTESSGTSEEVQTVEAEPGQTEQAECLSDMKTLTCSRGCEVLPSDISSEVKVSSGYEYESTGLNLEAKKGQSEDMDIIDVESTDMSISQAAKDLADVDIGKPLEETVGCIQEQDDTNKARSGSSLGLPDDFSPLDKLSSVSTDYQNGEDSEHMDVVKCKLLTAKDNTYYGNGYVSANKSAIPHDDTGTLFSAVGSSPTENANGNGVKKVELSADKS. 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03312 560 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 29 44 IPR018200 GO:0004843|GO:0006511
Seca8g03312 560 MobiDBLite consensus disorder prediction 456 495 - -
Seca8g03312 560 Pfam Ubiquitin carboxyl-terminal hydrolase 28 331 IPR001394 GO:0004843|GO:0016579
Seca8g03312 560 MobiDBLite consensus disorder prediction 537 560 - -
Seca8g03312 560 FunFam Ubiquitin carboxyl-terminal hydrolase 15 22 342 - -
Seca8g03312 560 CDD Peptidase_C19E 27 332 - -
Seca8g03312 560 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 29 337 - -
Seca8g03312 560 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 28 334 IPR028889 -
Seca8g03312 560 Gene3D Cysteine proteinases 24 342 - -
Seca8g03312 560 MobiDBLite consensus disorder prediction 336 367 - -
Seca8g03312 560 SUPERFAMILY Cysteine proteinases 24 335 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03312 Seca-Chr8 94844354 94849935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03312 4 345 Miscellaneous Gene Families AT4G31670 77.193 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03312 K11855 - gmx:100799652 917.916