Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03232 ATGATAAGTTTGAAGTTGATGATCTGTTTATATGAATGTACTTTCAAGTTAGCTGGAGCAACTTCAATTGAAACCCAAAAATTTTATGACTTTGGATTTGGACCCATTATGTTGCTTTGGTCCTCAAATTCTTGTTTCTTTTGGATGGTGAAACTTTTTGTTTTTGTTTCAAGCTGGTGGCAGCATTCCGCAAATTTAGCGAGTTATGAGCAGCAGGATGCTCATGAGTTTTTCATTTCGATGCTAGATGCAATCCACGAGAAAGAGGGCAAAACAATGAATGGAAGCAGAGGTAATGGAGAATGTCAATGCATTGCTCATAGAGTGTTCTATGGGCTATTGAGATCAGATGTTACCTGTATGGCCTGTGGATTCACCTCAACAACCTATGACCCTTGTGTGGACATCTCACTTAATTTGGATCCCAATGTCTCTTTAACCGAAAAGGGTAAAAACCTTACCAAACGGAATGAGGATGGCAGTATGTCTACACTTTTGGGTTGTTTGGATTTGTTCACTAGGCCAGAGAAGTTGGGGTCAGACCAGAAACTTTACTGCCAAAATTGCCAAAAAAGGCAGAACTCATTGAAACAAATGTCCATTAGAAAGCTCCCATTGGTTCTTAGTTTCCATGTAAAACGATTTGAGCACTCTTATGTTAAGAAGTTGTCAAGAAAAATAGATCGCTACCTACACTTTCCATTTTCCTTGGACATGACACCATATTTGTCCTCCTCAATCCTCAGAGCCAGATATGGAAATAGAATTTTTGCTTTTGGGGGTGAAGAATCAGATACGTTTTCTGAGTTTGAGATTTTTGCAGTGGTGACACATTCAGGAACACTAGAGTCTGGCCATTATGTTTCATATGTGCGTTTAAGGAAGCAATGGTACAGATGTGATGATGCTTGGATAACAGAGGTTGATGAGGCAACTGTTAGAGCTTCACAATGTTACATGATTTTCTATGTGCAAAAAACCCTGTTCAATAAAGCGAATGAAGATTCGAGTCACCTGCCGAATTCCCCTGGAAGAGAGCTATTTCTTCCTATTGCTGGGTGTTGCTAG 1068 0.397 MISLKLMICLYECTFKLAGATSIETQKFYDFGFGPIMLLWSSNSCFFWMVKLFVFVSSWWQHSANLASYEQQDAHEFFISMLDAIHEKEGKTMNGSRGNGECQCIAHRVFYGLLRSDVTCMACGFTSTTYDPCVDISLNLDPNVSLTEKGKNLTKRNEDGSMSTLLGCLDLFTRPEKLGSDQKLYCQNCQKRQNSLKQMSIRKLPLVLSFHVKRFEHSYVKKLSRKIDRYLHFPFSLDMTPYLSSSILRARYGNRIFAFGGEESDTFSEFEIFAVVTHSGTLESGHYVSYVRLRKQWYRCDDAWITEVDEATVRASQCYMIFYVQKTLFNKANEDSSHLPNSPGRELFLPIAGCC. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03232 355 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 326 IPR028889 -
Seca8g03232 355 SUPERFAMILY Cysteine proteinases 37 336 IPR038765 -
Seca8g03232 355 Pfam Ubiquitin carboxyl-terminal hydrolase 55 323 IPR001394 GO:0004843|GO:0016579
Seca8g03232 355 Gene3D Cysteine proteinases 34 331 - -
Seca8g03232 355 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03232 Seca-Chr8 92615365 92619341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03232 64 336 Miscellaneous Gene Families AT2G24640 30.634 1.14e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03232 K11366 - gmx:100806347 565.459