Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03222 ATGCATTCACAATCACAATCACAACCTCTTATCATGTCCATCCAGAGCCTCAAAATCACACCCCTTTTCATTCTTCTCATGAGCCTCATCCACGCTGAATCATCATCTTCTGATCAGTGGCATCATCCACCATATAACGGAGGTGTGAGAGCTGCATATTGGCCTTCAGGGGATGACTTTTCACCCTCTTCCATTGATACAAAGTACTTCACTCACATCTACTACGCCTTCATCCAACCCGACCCGGAATCGTTCAAGCTCCAAATAACCGACTCCGACAAAAAATGGATCCCACAGTTCATCAACGGTCTCCGAAACCGTTACCCACCGGTGAAGACTCTGTTCTCGTTGGGTGGAGGTGGCAGCAATTCAACCGTGTTCTCTCAGATGGCTAGCAACAAGCAAAACCGAAAAGCCTTCATAGATTCCACAATCAAAGTGGCACGAAAATACGGGTTTGATGGTATTGACTTGGATTGGGAGTTCCCAGCAGATGAAAAAGACATGTCTAACCTTGCTCTGTTATACAAAGAATGGTACCAGGCTATGGTCGTGGAAGCCCAGGCTCAGAGGAGACCACGTTTGCTTTTGACTTCTGCGGTCTATTACAACTCCACAATAAGGCTTATTGGTGATGGGCCGAGATCATACCCGGCCCAAGCCATTCGGCAGTATTTGGATTGGGCTAGCCCAATGTGTTTTGATTATCACGGTGCCTGGGCCAATGAGACGGGCTTCAATGCTGCGTTGTATGATCCGAATTCGGAAATAAGCACCAAATTTGGTATCGGATCTTGGATCAAATCGGGTGTGCCGCCCGAGAAGTTAGTTATGGGTTTGCCGTTGTATGGGAGGACGTGGGAGCTGAAAGATCCGAATGTTCATGGGGTTGGGGCTGAAGCGGTTGGTCCAGCAGTTGATACAGATGGTACTATGGATTATGATCAAATATTGGAGTTTAATAAAGAGAATGGTGCCACTGTTGTGTTTGATGAGGTAGCTGTGTCGTTTTACTCTTATGCGGGTACTACTTGGATCGGGTATGATGATGGACCCTCCATAACAAAGAAGGTTCAGTTTGCTAAGTCAAAGAACTTGAAAGGCTATTTCTTTTGGGCTATTGGGAAGGACAAGGATTGGACCATCTCAAGACAAGGTCTTCAAATGCATGGGGACACTAAGGGCTATGCCGAGATTCATGTAATCCTCAACGGTCATAATTGA 1224 0.4632 MHSQSQSQPLIMSIQSLKITPLFILLMSLIHAESSSSDQWHHPPYNGGVRAAYWPSGDDFSPSSIDTKYFTHIYYAFIQPDPESFKLQITDSDKKWIPQFINGLRNRYPPVKTLFSLGGGGSNSTVFSQMASNKQNRKAFIDSTIKVARKYGFDGIDLDWEFPADEKDMSNLALLYKEWYQAMVVEAQAQRRPRLLLTSAVYYNSTIRLIGDGPRSYPAQAIRQYLDWASPMCFDYHGAWANETGFNAALYDPNSEISTKFGIGSWIKSGVPPEKLVMGLPLYGRTWELKDPNVHGVGAEAVGPAVDTDGTMDYDQILEFNKENGATVVFDEVAVSFYSYAGTTWIGYDDGPSITKKVQFAKSKNLKGYFFWAIGKDKDWTISRQGLQMHGDTKGYAEIHVILNGHN. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03222 407 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 153 161 IPR001579 GO:0004553|GO:0005975
Seca8g03222 407 PANTHER CHITINASE 35 385 - -
Seca8g03222 407 Gene3D Glycosidases 63 378 - -
Seca8g03222 407 Gene3D - 282 348 IPR029070 -
Seca8g03222 407 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 48 393 IPR001223 GO:0005975
Seca8g03222 407 SUPERFAMILY (Trans)glycosidases 47 379 IPR017853 -
Seca8g03222 407 Pfam Glycosyl hydrolases family 18 51 377 IPR001223 GO:0005975
Seca8g03222 407 FunFam Class V chitinase CHIT5b 282 348 - -
Seca8g03222 407 SMART 2g34 48 377 IPR011583 GO:0008061
Seca8g03222 407 SUPERFAMILY Chitinase insertion domain 283 348 IPR029070 -
Seca8g03222 407 CDD GH18_plant_chitinase_class_V 49 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03222 Seca-Chr8 92139269 92141776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03222 49 388 Glycoside Hydrolase AT4G19810 41.520 4.17e-95 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03222 K01183 - gmx:100787511 600.897