Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03197 ATGGCGTCTTCGGTGCTCTCTGTAGCTTCACACTCTGTCTCTCCCTCTGCTTCACTTTCGATGCATGAAACCCACAAGGGAAAGCCCAAGCTTGGAGGCAGCTGTTTGAGATTTAGTAAGGAAGGAACCAATCACTTTGCAAATTCAAGGTCTTCTGGTCGGATCTCTATGACTGTTGCGGTTAATGTTTCTCGATTTGAGGGCATACCGATGGCTCCTCCTGATCCAATTCTTGGAGTTTCTGAAGCATTTAAAGCAGACACAAGTGATATTAAGCTCAATCTTGGAGTTGGGGCATACAGAACCGAAGAACTACATCCATATGTGCTTGATGTTGTTAAGAAGGCAGAGAAACTTATGCTGGAGAGAGGGGAAAACAAAGAGTATCTCCCTATTGAGGGTTTGGCTGCATTTAATAAGGCAACTGCAGAGTTGTTACTTGGAGCAGACAACCCAGCAATCAAAGAGCAAAGGGTTGCCACTGTCCAAGGTCTTTCCGGAACTGGTTCTCTGCGACTAGGTGCAGCTCTGATAGAAAGATATTTTCAAGGGGCTAAAGTTTTGATATCATCTCCTACCTGGGGTAATCACAAGAATATTTTCAATGATGCTAGAGTCCCATGGTCTGAGTACCGATATTATGATCCCAAGACAGTTGGATTGGATTTTGAGGGCATGATAGAAGATATAAAGTCAGCTCCTGAAGGATCTTTTGTGCTACTTCATGGATGTGCTCACAACCCTACTGGTATTGATCCAACACCTGAACAGTGGGAAAAAATAGCTGATGTAATTCAACAAAAGAACCACATTCCATTTTTTGATGTTGCTTACCAGGGCTTTGCTAGTGGAAGCCTTGATGAAGATGCTGCGTCTGTGAGATTATTTGTCTCACGTGGCATGGAAGTTCTTGTAGCTCAGTCATACAGCAAAAATCTTGGTCTCTATGCTGAAAGGATTGGAGCAATTAATGTCATTTCCTCATCACCAGAATCTGCAGCAAGGGTAAAGAGCCAATTGAAAAGGCTTGCCCGACCAATGTACTCTAATCCACCTGTTCACGGGGCTAGGATTGTTGCCGATATTGTTGGAAACCCAACTCTCTTCAATGAATGGAGAGCAGAGATGGAAATGATGGCAGGGAGGATAAAGAATGTTAGACAGAAGCTATATGATAGTATTTCTTCAAAAGACAAGAGTGGAAAGGATTGGTCATTCATACTAAAGCAGATAGGCATGTTCTCATACACCGGCTTGAACAAGACCCAGAGTGACAATATGACAAATAAGTGGCATGTATACATGACAAAGGATGGAAGGATTTCCCTGGCTGGATTGTCTTTGGCCAAATGTGAATACCTTGCAGATGCTATTATTGACTCGTTTCACAATGTCAGCTGA 1401 0.4304 MASSVLSVASHSVSPSASLSMHETHKGKPKLGGSCLRFSKEGTNHFANSRSSGRISMTVAVNVSRFEGIPMAPPDPILGVSEAFKADTSDIKLNLGVGAYRTEELHPYVLDVVKKAEKLMLERGENKEYLPIEGLAAFNKATAELLLGADNPAIKEQRVATVQGLSGTGSLRLGAALIERYFQGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIEDIKSAPEGSFVLLHGCAHNPTGIDPTPEQWEKIADVIQQKNHIPFFDVAYQGFASGSLDEDAASVRLFVSRGMEVLVAQSYSKNLGLYAERIGAINVISSSPESAARVKSQLKRLARPMYSNPPVHGARIVADIVGNPTLFNEWRAEMEMMAGRIKNVRQKLYDSISSKDKSGKDWSFILKQIGMFSYTGLNKTQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSFHNVS. 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03197 466 Pfam Aminotransferase class I and II 91 458 IPR004839 GO:0009058|GO:0030170
Seca8g03197 466 Gene3D Aspartate Aminotransferase, domain 1 69 458 IPR015422 GO:0003824
Seca8g03197 466 PANTHER ASPARTATE AMINOTRANSFERASE 59 464 IPR000796 GO:0006520|GO:0008483
Seca8g03197 466 FunFam Aspartate aminotransferase 124 365 - -
Seca8g03197 466 SUPERFAMILY PLP-dependent transferases 64 460 IPR015424 -
Seca8g03197 466 CDD AAT_like 93 458 - -
Seca8g03197 466 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 308 321 IPR004838 GO:0003824|GO:0009058|GO:0030170
Seca8g03197 466 Gene3D - 124 365 IPR015421 GO:0003824
Seca8g03197 466 FunFam Aspartate aminotransferase 351 458 - -
Seca8g03197 466 PRINTS Aspartate aminotransferase signature 239 258 IPR000796 GO:0006520|GO:0008483
Seca8g03197 466 PRINTS Aspartate aminotransferase signature 407 425 IPR000796 GO:0006520|GO:0008483
Seca8g03197 466 PRINTS Aspartate aminotransferase signature 270 282 IPR000796 GO:0006520|GO:0008483
Seca8g03197 466 PRINTS Aspartate aminotransferase signature 338 363 IPR000796 GO:0006520|GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03197 Seca-Chr8 91180180 91184387 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03197 K00811 - gmx:547792 830.861