Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03163 ATGAGTAAAGTTTGTTGGCCTTACTTTGATCCTGAGTTTGATACTCTCCCTGAAAGAATATATGGCCCACCGTGCCGAGTCTGTATTGACAATGAAAGCATGGAAGGATGTACATTGGTGAAGGTAGATAGCGTTAACCAGCAGGGTCTCCTTCTAGAAGTTGTGCAAATTTTGACAGACATGAATCTTCAAATCTGCAAAAGCTATATTTCATCTGATGCTGGCTGGTTCATGGATGTTTTTCATGTTAAAGATGCGCATGGGAACAAATTAACCGACCAGAAAGTCATTAATTACATCCAGCAGGCCATAGGAGCATCAAGAGGTTCTCCATCATCATACAACAATTACAACAACAATTCAATAATCACCATGACCAAGACCTATTCCAAAAAGGTTTTCCCATTGGTCCCCAACGACCAACACACCGCCATAGAAATGACCGGAGCAGACCGTCCCGGCCTATTTTCCGAGATCTCCGCCGCCCTAGCCGACCTCCATTGCAACATTGTCGAAGCTCATGCATGGAGCCACAACGCAAGGTTAGCATGTGTTGCATATATTTCAGACCAATCCACCGATTCCGCCATTGATGACCCTTCTCGCCTTGCCTCCATTGAGGACCATCTCACCATGGTGCTCCGTGCCACCACCGACCCTAACGGTGGTGACACTAATAACCACCCTGATGTGAAGACTTCGGAGCTTCTTGGAGGAGAAGGTACTGTGACTAACGTTGAACGGAGGTTGCACCAATTGATGCTTTCGGTGAGGGATTTTGATGAGGCTCCTTATTCTTCGTCTAATTATAATAAAGAGATGCGAAGGAAGAGAATGGTGACGATTGAAAATTGTGAGCAAAAGGGGTATTCAATTGTGAATATTGAGTGTAAGGATCGTCCAAGGCTCATGTTTGATACTGTTTGCACCTTAATTGACATGCAATACGTCATTTTCCATGCTTCCATCCGTTCCCAAGCAGGTCATGCATTTCAGGAATATTTTATCCGACACATAGACGGATATGCATTGAATACAGCAAGCGAGAAGGAACGCGTAATGAAATGCTTAGAGGCAGCTCTCGAACGACGAGTTTGTGAGGGAGTTAGGCTAGAATTGTGTGCAGACAACAGAGTTGGGTTACTCTCAGATATAACTCGAGTACTCCGAGAGAATGGTCTTGTCGTTGTTCGAGCAGATGTTGAAACACATGGAGAGAAATCTGTGAATGCTTTCTATGTCAGAGACATCTCAGGGAATGAGGTTGATATAGAATACTTCAGTAAGTCAGTGAAGAGGGAAATGGGTCCAATTGTGACCCTCCATGTTAAGAATGAGACTAGTAGAAGACAGACAACAACATCACCTCAAAAGTCTCGTCTCTCATTCAGAGGCAAGCTAAGATATGGGATTGAACGCCTTTCTCTTGGCTTCATGACATAA 1443 0.4421 MSKVCWPYFDPEFDTLPERIYGPPCRVCIDNESMEGCTLVKVDSVNQQGLLLEVVQILTDMNLQICKSYISSDAGWFMDVFHVKDAHGNKLTDQKVINYIQQAIGASRGSPSSYNNYNNNSIITMTKTYSKKVFPLVPNDQHTAIEMTGADRPGLFSEISAALADLHCNIVEAHAWSHNARLACVAYISDQSTDSAIDDPSRLASIEDHLTMVLRATTDPNGGDTNNHPDVKTSELLGGEGTVTNVERRLHQLMLSVRDFDEAPYSSSNYNKEMRRKRMVTIENCEQKGYSIVNIECKDRPRLMFDTVCTLIDMQYVIFHASIRSQAGHAFQEYFIRHIDGYALNTASEKERVMKCLEAALERRVCEGVRLELCADNRVGLLSDITRVLRENGLVVVRADVETHGEKSVNAFYVRDISGNEVDIEYFSKSVKREMGPIVTLHVKNETSRRQTTTSPQKSRLSFRGKLRYGIERLSLGFMT. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03163 480 ProSiteProfiles ACT domain profile. 144 221 IPR002912 -
Seca8g03163 480 Gene3D - 139 219 - -
Seca8g03163 480 ProSiteProfiles ACT domain profile. 39 115 IPR002912 -
Seca8g03163 480 SUPERFAMILY ACT-like 367 430 IPR045865 -
Seca8g03163 480 CDD ACT_ACR_1 37 108 - -
Seca8g03163 480 SUPERFAMILY ACT-like 34 103 IPR045865 -
Seca8g03163 480 Pfam ACT domain 144 197 IPR002912 -
Seca8g03163 480 Pfam ACT domain 370 416 IPR002912 -
Seca8g03163 480 CDD ACT_ACR_2 143 216 - -
Seca8g03163 480 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 12 443 IPR040217 -
Seca8g03163 480 CDD ACT_ACR_3 290 364 - -
Seca8g03163 480 SUPERFAMILY ACT-like 139 212 IPR045865 -
Seca8g03163 480 ProSiteProfiles ACT domain profile. 370 446 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03163 Seca-Chr8 90016897 90020903 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03163 - - gmx:100820595 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03163 8 90016897 90020903 Seca8g03163 8 90016897 90020903 ECH