Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03071 ATGCTCTCTCAGAAGCCTCGTCAGATACTCTTCTCCCTTCGTTCATTGCTCTTAATCCTCAAACCAAACCCTATTCCTTCAATCCGAGCCTCGCCGCATCGTCTCTCTTCTTCTTCTTCTTCTTGGCTATCCGAGCCCGGAAACCCAATCATCCAATGGCCCTCTCTACCAATCACCCAACCTACACCAAAACCCGTTCCGAACCCGAGCCAGAATGCCGAACCCGACTCCGACTTCTCGCGCAATGATTTCTCTGTCATTTCCAATCTCTTCACCGACCCTTCCATCTCTCCCGGTTCGGTCCTCCATGCCGAACTCGACCGGTCCGGAATCGAACCGGGTTCGTCACTCTTGCGTGCTGTGTTCGATCATTTCGATTCGTCCCCGAAGCTGCTGCACTCGCTATTCCTCTGGGCCGAGAAGAAACCCGGGTTCAGACCCGACCCGACGCTCTTGGACTCCGTGGTCAACGTTCTAGCAAAATCGAAGGAGTTTGACTCCGCTTGGACTCTTGTTCTGGATCGCATCAAAAGAGACGAGGGAGAAGAAACCTTGGTTTCCATTCGTACCTTTGCTATCATGATTCGACGCTATGCGCGCGCAGGTATGGCCAGACCTGCAATTAGAACATTTGAGTTTGCTCATAATAAGTCAATTGTGGATTCTGCCTCAGAAATGAGTTTATTTGAGATATTGATGGATTCACTTTGTAAAGAAGGGTCTGTGAGGCCAGCTTCAGAGTATTTCCATAAGAGAATGGTGATGGATCCCGGTTGGGTTCCTTCCATTCGGGTTTATAACATAATGTTAAATGGATGGTTTCGAGCAAGGAAACTGAAACATGGTGAGAGACTTTGGGCAGAGATGAAGAAGGAGAATGTGAGACCGAGTGTTGTGACATATGGTACCCTTGTGGAAGGATATTGTCGGATGGGCCGTGTTGAAAAGGCACTTGAAATGGTTGGTGAAATGACCAAAGAAGGAATTGGACCAAATGCAATTGTGTATAACCCAATAATTGATGCATTGGCAGAAGCTGGGAGGTTCACAGAGGCTTTGGGTATGTTGGAGCGTTTTCATGTTTTAGAAATAGGTCCCACTGATTCAACATACAATTCCCTTGTGAAGGGGTTTTGCAAGGCAGGAGATCTTGTAGGTGCCAGTAAAATTCTTAAAATGATGATAAGCAGGGGTTTTCTTCCAAGCCCCACCACCTATAACTACTTCTTTAGGTACTTTTCAAGATGTGGAAAAGTTGAGGAGGGAATGAACCTGTATACCAAGTTGAATGAATCTGGTCATACACCAGATCGGCTAACTTACCATCTTTTGGTGAAAATTTTATGTGAAGAGGAGAGGTTAGACTTGGCTATTCAAGTTAGCAAGGAAATGAGGCTTAAAGGATATGACATGGACTTGGCTACAAGTACCATGTTAATTCATTTACTATGCAAAATGCATAGGTTTGAAGAGGCTTTTGCGGAATTTGAGGACATGATACGAAGGGGTATAGTTCCTCAGTATCTCACATTTAAGAGAATGAATGCTGAGTTAAAGATACAAGGTATGACTGAAATGGCTCAAAGACTTTGTAACTTGATGTCTTCTGTTCCCCATTCTAACAACTTGCCAAATACTTATGGTGAAGATAGAAAGAATGCAGACGCACGACGAAAATCTATAATTAAGAAAGCCAAAGCATTTTCTGATATGCTGAAGAACTGTGAGGACCCTAATGAACTTGAAAAGTATAGAAGTTCATCAGAAAATGCTGTCTCAAGCGCAAACTGTTTGATAGAGGATATTCAGAAAAAGATAAGTACAAGATGA 1830 0.4404 MLSQKPRQILFSLRSLLLILKPNPIPSIRASPHRLSSSSSSWLSEPGNPIIQWPSLPITQPTPKPVPNPSQNAEPDSDFSRNDFSVISNLFTDPSISPGSVLHAELDRSGIEPGSSLLRAVFDHFDSSPKLLHSLFLWAEKKPGFRPDPTLLDSVVNVLAKSKEFDSAWTLVLDRIKRDEGEETLVSIRTFAIMIRRYARAGMARPAIRTFEFAHNKSIVDSASEMSLFEILMDSLCKEGSVRPASEYFHKRMVMDPGWVPSIRVYNIMLNGWFRARKLKHGERLWAEMKKENVRPSVVTYGTLVEGYCRMGRVEKALEMVGEMTKEGIGPNAIVYNPIIDALAEAGRFTEALGMLERFHVLEIGPTDSTYNSLVKGFCKAGDLVGASKILKMMISRGFLPSPTTYNYFFRYFSRCGKVEEGMNLYTKLNESGHTPDRLTYHLLVKILCEEERLDLAIQVSKEMRLKGYDMDLATSTMLIHLLCKMHRFEEAFAEFEDMIRRGIVPQYLTFKRMNAELKIQGMTEMAQRLCNLMSSVPHSNNLPNTYGEDRKNADARRKSIIKKAKAFSDMLKNCEDPNELEKYRSSSENAVSSANCLIEDIQKKISTR. 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03071 609 Gene3D Tetratricopeptide repeat domain 126 245 IPR011990 GO:0005515
Seca8g03071 609 Gene3D Tetratricopeptide repeat domain 467 538 IPR011990 GO:0005515
Seca8g03071 609 Gene3D Tetratricopeptide repeat domain 326 394 IPR011990 GO:0005515
Seca8g03071 609 Gene3D Tetratricopeptide repeat domain 395 466 IPR011990 GO:0005515
Seca8g03071 609 Gene3D Tetratricopeptide repeat domain 246 325 IPR011990 GO:0005515
Seca8g03071 609 Pfam PPR repeat family 369 411 IPR002885 -
Seca8g03071 609 Pfam PPR repeat family 261 310 IPR002885 -
Seca8g03071 609 NCBIfam pentatricopeptide repeat 405 437 IPR002885 -
Seca8g03071 609 NCBIfam pentatricopeptide repeat 334 367 IPR002885 -
Seca8g03071 609 NCBIfam pentatricopeptide repeat 265 297 IPR002885 -
Seca8g03071 609 NCBIfam pentatricopeptide repeat 299 333 IPR002885 -
Seca8g03071 609 NCBIfam pentatricopeptide repeat 370 402 IPR002885 -
Seca8g03071 609 NCBIfam pentatricopeptide repeat 477 506 IPR002885 -
Seca8g03071 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Seca8g03071 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Seca8g03071 609 Pfam PPR repeat 335 358 IPR002885 -
Seca8g03071 609 Pfam PPR repeat 475 504 IPR002885 -
Seca8g03071 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Seca8g03071 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Seca8g03071 609 MobiDBLite consensus disorder prediction 53 78 - -
Seca8g03071 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Seca8g03071 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Seca8g03071 609 MobiDBLite consensus disorder prediction 56 70 - -
Seca8g03071 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Seca8g03071 609 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 32 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03071 Seca-Chr8 86168462 86172284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03071 189 543 Glycosyltransferase AT1G05670 23.380 1.25e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03071 - - gmx:100793484 896.73